KRISHI
ICAR RESEARCH DATA REPOSITORY FOR KNOWLEDGE MANAGEMENT
(An Institutional Publication and Data Inventory Repository)
"Not Available": Please do not remove the default option "Not Available" for the fields where metadata information is not available
"1001-01-01": Date not available or not applicable for filling metadata infromation
"1001-01-01": Date not available or not applicable for filling metadata infromation
Please use this identifier to cite or link to this item:
http://krishi.icar.gov.in/jspui/handle/123456789/24824
Title: | Development and validation of an SNP genotyping array and construction of a high-density linkage map in castor |
Other Titles: | Not Available |
Authors: | S. Senthilvel Arpita Ghosh Mobeen Shaik Ranjan Kumar Shaw Prashanth G. Bagali |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | ICAR::Indian Institute of Oilseeds Research Xcelris Labs Ltd |
Published/ Complete Date: | 2019-02-28 |
Project Code: | Not Available |
Keywords: | Ricinus communis L. Genomic resources Next generation sequencing High-throughput genotyping Consensus map |
Citation: | Not Available |
Series/Report no.: | Not Available; |
Abstract/Description: | Castor is a commercially important oilseed crop that provides raw materials for several industries. Currently, the availability of genomic resources for castor is very limited. In this study, genome-wide SNPs were discovered in castor via whole-genome sequencing of 14 diverse lines to an average of 34X coverage. A total of 2,179,759 putative SNPs were detected, and a genotyping array was designed with 6,000 high-quality SNPs representing 2,492 scaffolds of the draft castor genome (87.5% genome coverage). The array was validated by genotyping a panel of 314 inbred castor lines, which resulted in 5,025 scorable SNPs with a high call rate (98%) and reproducibility (100%). Using this array, a consensus linkage map consisting of 1,978 SNP loci was constructed with an average inter-marker distance of 0.55 cM. The genome-wide SNP data, the genotyping array and the dense linkage map are valuable genomic tools for promoting high-throughput genomic research and molecular breeding in castor. |
Description: | Not Available |
ISSN: | Not Available |
Type(s) of content: | Research Paper |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | Scientific Reports |
NAAS Rating: | 10 |
Volume No.: | 9 |
Page Number: | 3003 |
Name of the Division/Regional Station: | Crop Improvement |
Source, DOI or any other URL: | https://doi.org/10.1038/s41598-019-39967-9 1 |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/24824 |
Appears in Collections: | CS-IIOR-Publication |
Files in This Item:
There are no files associated with this item.
Items in KRISHI are protected by copyright, with all rights reserved, unless otherwise indicated.