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http://krishi.icar.gov.in/jspui/handle/123456789/41598| Title: | The complete mitogenome of brown trout (Salmo trutta fario) and its phylogeny |
| Other Titles: | Not Available |
| Authors: | Prabhati K. Sahoo Lalit Singh Lata Sharma Rohit Kumar Vijay K. Singh S.Ali Atul K. Singh Ashoktaru Barat |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Directorate of Cold Water Fisheries Research |
| Published/ Complete Date: | 2016-01-01 |
| Project Code: | Not Available |
| Keywords: | Brown trout, Illumina Miseq, next-generation sequencing (NGS), phylogeny, Salmonidae |
| Publisher: | Not Available |
| Citation: | Sahoo, P. K., Singh, L., Sharma, L., Kumar, R., Singh, V. K., Ali, S., Singh, A. K. And Barat, A. (2016). The complete mitogenome of brown trout (Salmo trutta fario) and its phylogeny. Mitochondrial DNA, DOI:10.3109/19401736.2015.1101565 |
| Series/Report no.: | Not Available; |
| Abstract/Description: | The complete mitochondrial genome of Salmo trutta fario, commonly known as brown trout, was sequenced using NGS technology. The mitochondrial genome size was determined to be 16 677 bp and composed of 13 protein-coding gene (PCG), 22 tRNAs, 2 rRNA genes, and 1 putative control region. The overall mitogenome composition of S. trutta fario is A: 28.13%, G:16.44%, C: 29.47%, and T: 25.96% with A + T content of 54.09% and G + C content of 45.91%. The gene arrangement and the order are similar to other vertebrates. The phylogenetic tree constructed using 42 complete mitogenomes of Salmonidae fishes confirmed the position of the present species under the genus Salmo of subfamily Salmoninae. NGS platform was proved to be a rapid and time saving technology to reveal complete mitogenomes. |
| Description: | Not Available |
| ISSN: | 2470-1408 |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Mitochondrial DNA Part A - DNA Mapping, Sequencing & Analysis |
| NAAS Rating: | 7.07 |
| Volume No.: | 27(6) |
| Page Number: | 4563–4565 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | https://doi.org/10.3109/19401736.2015.1101565 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/41598 |
| Appears in Collections: | FS-DCWFR-Publication |
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