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http://krishi.icar.gov.in/jspui/handle/123456789/42514
Title: | Genome-wide analysis of HSP70 family protein in Vigna radiata and co-expression analysis under abiotic and biotic stress |
Other Titles: | Not Available |
Authors: | Rahul Singh Jasrotia Sarika Jaiswal Pramod Kumar Yadav Mustafa Raza M. A. Iquebal Anil Rai Dinesh Kumar |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | Sam Higginbottom University of Agriculture,Technology & Sciences (SHUATS), Allahabad ICAR::Indian Agricultural Statistics Research Institute |
Published/ Complete Date: | 2020-05-01 |
Project Code: | Not Available |
Keywords: | HSP70s Vigna radiata gene expression genome-wide analysis heat shock proteins |
Publisher: | Not Available |
Citation: | Not Available |
Series/Report no.: | Not Available; |
Abstract/Description: | Heat shock protein 70 (Hsp70), a 70-kDa protein, also known as a molecular chaperone, is highly conserved. It plays a major role in cellular functions such as protein folding, regulation of protein degradation, translocation of proteins across membranes, receptor signaling, and protein assembly or disassembly. Vigna radiata is an important legume crop with available whole-genome sequence, but no such study on the HSP70 family is reported. A total of 32 V. radiate HSP70s (Vr-HSP70s) were identified and described. They are phylogenetically clustered into four subgroups. Vr-HSP70s show variations in intron/exon organization. This indicates that introns may play an essential role in gene regulating. The coexpression analysis of Vr-HSP70s revealed that these genes were involved in both abiotic and biotic stresses. Three cytoplasmic hub genes namely Vr-HSP70-C-14, Vr-HSP70-C-29, and Vr-HSP70-C-30 were found common in both stresses. Our findings provide directions for future studies to dissect functional analysis of Vr-HSP70s in response to abiotic and biotic stresses. |
Description: | Not Available |
ISSN: | Not Available |
Type(s) of content: | Article |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | JOURNAL OF COMPUTATIONAL BIOLOGY |
NAAS Rating: | 7.05 |
Volume No.: | 27(5) |
Page Number: | 738-754 |
Name of the Division/Regional Station: | Not Available |
Source, DOI or any other URL: | DOI: 10.1089/cmb.2019.0166 |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/42514 |
Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
File | Description | Size | Format | |
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Genome-Wide Analysis of HSP70 Family Protein in Vigna radiata and Coexpression Analysis Under Abiotic and Biotic Stress.pdf | 664.74 kB | Adobe PDF | View/Open |
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