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http://krishi.icar.gov.in/jspui/handle/123456789/48821| Title: | Draft Genome of Fusarium oxysporum f. sp. cubense Strain Tropical Race-4 Infecting Cavendish (AAA) Group of Banana in India |
| Other Titles: | Not Available |
| Authors: | Thangavelu, R., Edwin Raj, E., Loganathan, M., Pushpakanth, P. and Uma, S. |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::National Research Centre for Banana |
| Published/ Complete Date: | 2020-12-09 |
| Project Code: | Not Available |
| Keywords: | Foc TR4; banana wilt disease; secreted in xylem; whole-genome sequencing. |
| Publisher: | APS Publications |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Fusarium wilt, caused by the fungus Fusarium oxysporum f. sp. cubense, is the most serious pandemic disease of banana. In this study, we report the draft genome of F. oxysporum f. sp. cubense vegetative compatibility group (VCG) 01213/16 of strain tropical race 4 (TR4) that infects the Cavendish (AAA) group of banana collected from the subtropical region in India. The genome assembly of SFoc TR4 comprises 47,384,463 bp with 4,034 contigs and 15,508 protein-coding regions. Based on VCG analysis, the fungal isolate belongs to F. oxysporum f. sp. cubense TR4 but the genome sequence of SFoc TR4 shows differences in secreted-in-xylem (SIX) protein gene clusters (specifically, SIX8) in comparison with the reference genome of F. oxysporum f. sp. lycopersici and F. oxysporum f. sp. cubense TR4. |
| Description: | Not Available |
| ISSN: | 0191-2917 |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Plant Disease |
| NAAS Rating: | 9.81 |
| Volume No.: | 105(2) |
| Page Number: | 481-483 |
| Name of the Division/Regional Station: | Crop Protection |
| Source, DOI or any other URL: | https://pubmed.ncbi.nlm.nih.gov/32748718/ https://doi.org/10.1094/PDIS-06-20-1170-A |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/48821 |
| Appears in Collections: | HS-NRCB-Publication |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| pdis-06-20-1170-a.pdf | 467.04 kB | Adobe PDF | View/Open |
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