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http://krishi.icar.gov.in/jspui/handle/123456789/81575
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DC Field | Value | Language |
---|---|---|
dc.contributor.author | Cheeran K | en_US |
dc.contributor.author | Suresh KP | en_US |
dc.contributor.author | Jacob SS | en_US |
dc.contributor.author | Sathish Gowda CS | en_US |
dc.contributor.author | Gejendiran N | en_US |
dc.contributor.author | Sridevi R | en_US |
dc.contributor.author | Patil SS | en_US |
dc.date.accessioned | 2024-03-05T13:32:30Z | - |
dc.date.available | 2024-03-05T13:32:30Z | - |
dc.date.issued | 2023-10-03 | - |
dc.identifier.citation | 9. Cheeran, K., Suresh, K.P., Jacob, S.S., Sathish Gowda, C.S., Gejendiran, N., Sridevi, R and Patil, S.S. (2023). Analysis of codon usage bias of six genes of replicase/coat protein of tobacco mosaic virus. Indian Journal of Agricultural Research, doi: 10.18805/IJARe.A-6107. | en_US |
dc.identifier.issn | 0976-058X | - |
dc.identifier.uri | http://krishi.icar.gov.in/jspui/handle/123456789/81575 | - |
dc.description | Not Available | en_US |
dc.description.abstract | Background: Tobacco mosaic virus (TMV) stands as a highly studied virus and consequently, its features and composition are extensively understood. It has been found to induce diverse infections in numerous plant species, with tobacco leaves being notably affected, showing mottled browning. Presently, the sole available method to control its spread is by removing infected plants. Understanding codon use bias is crucial as it could play a pivotal role in molecular interventions aimed at halting the virus’s replication and multiplication, thereby helping to contain its propagation. Methods: Currently, the research focuses on assessing codon bias within six genes related to the replicase/coat protein of TMV, namely TMVgp1, TMVgp2, TMVgp3, TMVgp4, TMVgp5 and TMVgp6. To conduct this analysis, various methods such as relative dinucleotide abundance, relative synonymous codon usage (RSCU), neutrality plot and parity rule 2 (PR2) plot were employed. Result: All of the identified genes had a modest codon bias, according to the study on codon usage, as well as the function of mutation pressure in gene TMVgp3 and natural selection in genes TMVgp1, TMVgp2, TMVgp4, TMVgp5 and TMVgp6. The Research into codon use bias showed that the TMV virus’s chosen genes are subjected to naturally occurring selection as well as mutational pressure. | en_US |
dc.description.sponsorship | Not Available | en_US |
dc.language.iso | English | en_US |
dc.publisher | ARCC Journals | en_US |
dc.relation.ispartofseries | Not Available; | - |
dc.subject | Codon usage analysis | en_US |
dc.subject | Plant virus | en_US |
dc.subject | Tobacco mosaic virus | en_US |
dc.title | Analysis of codon usage bias of six genes of replicase/coat protein of tobacco mosaic virus | en_US |
dc.title.alternative | Not Available | en_US |
dc.type | Research Paper | en_US |
dc.publication.projectcode | Not Available | en_US |
dc.publication.journalname | Indian Journal of Agricultural Research | en_US |
dc.publication.volumeno | Not Available | en_US |
dc.publication.pagenumber | Not Available | en_US |
dc.publication.divisionUnit | Not Available | en_US |
dc.publication.sourceUrl | doi 10.18805/IJARe.A-6107 | en_US |
dc.publication.authorAffiliation | Sir M. Visvesvaraya Institute of Technology, Bengaluru-560 064, Karnataka, India. | en_US |
dc.publication.authorAffiliation | ICAR::National Institute of Veterinary Epidemiology and Disease Informatics | en_US |
dc.ICARdataUseLicence | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf | en_US |
dc.publication.journaltype | Included NAAS Journal list | en_US |
dc.publication.naasrating | 5.60 | en_US |
dc.publication.impactfactor | Not Available | en_US |
Appears in Collections: | AS-NIVEDI-Publication |
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