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Please use this identifier to cite or link to this item:
http://krishi.icar.gov.in/jspui/handle/123456789/24824
Full metadata record
DC Field | Value | Language |
---|---|---|
dc.contributor.author | S. Senthilvel | en_US |
dc.contributor.author | Arpita Ghosh | en_US |
dc.contributor.author | Mobeen Shaik | en_US |
dc.contributor.author | Ranjan Kumar Shaw | en_US |
dc.contributor.author | Prashanth G. Bagali | en_US |
dc.date.accessioned | 2019-11-16T06:36:38Z | - |
dc.date.available | 2019-11-16T06:36:38Z | - |
dc.date.issued | 2019-02-28 | - |
dc.identifier.citation | Not Available | en_US |
dc.identifier.issn | Not Available | - |
dc.identifier.uri | http://krishi.icar.gov.in/jspui/handle/123456789/24824 | - |
dc.description | Not Available | en_US |
dc.description.abstract | Castor is a commercially important oilseed crop that provides raw materials for several industries. Currently, the availability of genomic resources for castor is very limited. In this study, genome-wide SNPs were discovered in castor via whole-genome sequencing of 14 diverse lines to an average of 34X coverage. A total of 2,179,759 putative SNPs were detected, and a genotyping array was designed with 6,000 high-quality SNPs representing 2,492 scaffolds of the draft castor genome (87.5% genome coverage). The array was validated by genotyping a panel of 314 inbred castor lines, which resulted in 5,025 scorable SNPs with a high call rate (98%) and reproducibility (100%). Using this array, a consensus linkage map consisting of 1,978 SNP loci was constructed with an average inter-marker distance of 0.55 cM. The genome-wide SNP data, the genotyping array and the dense linkage map are valuable genomic tools for promoting high-throughput genomic research and molecular breeding in castor. | en_US |
dc.description.sponsorship | Not Available | en_US |
dc.language.iso | English | en_US |
dc.relation.ispartofseries | Not Available; | - |
dc.subject | Ricinus communis L. | en_US |
dc.subject | Genomic resources | en_US |
dc.subject | Next generation sequencing | en_US |
dc.subject | High-throughput genotyping | en_US |
dc.subject | Consensus map | en_US |
dc.title | Development and validation of an SNP genotyping array and construction of a high-density linkage map in castor | en_US |
dc.title.alternative | Not Available | en_US |
dc.type | Research Paper | en_US |
dc.publication.projectcode | Not Available | en_US |
dc.publication.journalname | Scientific Reports | en_US |
dc.publication.volumeno | 9 | en_US |
dc.publication.pagenumber | 3003 | en_US |
dc.publication.divisionUnit | Crop Improvement | en_US |
dc.publication.sourceUrl | https://doi.org/10.1038/s41598-019-39967-9 1 | en_US |
dc.publication.authorAffiliation | ICAR::Indian Institute of Oilseeds Research | en_US |
dc.publication.authorAffiliation | Xcelris Labs Ltd | en_US |
dc.ICARdataUseLicence | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf | en_US |
dc.publication.naasrating | 10 | en_US |
Appears in Collections: | CS-IIOR-Publication |
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