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Please use this identifier to cite or link to this item:
http://krishi.icar.gov.in/jspui/handle/123456789/42344
Full metadata record
DC Field | Value | Language |
---|---|---|
dc.contributor.author | Sandeep Kumar Verma | en_US |
dc.contributor.author | Rahul Singh Jasrotia | en_US |
dc.contributor.author | M. A. Iquebal | en_US |
dc.contributor.author | Sarika Jaiswal | en_US |
dc.contributor.author | U.B. Angadi | en_US |
dc.contributor.author | Anil Rai | en_US |
dc.contributor.author | Dinesh Kumar | en_US |
dc.date.accessioned | 2020-11-17T10:20:20Z | - |
dc.date.available | 2020-11-17T10:20:20Z | - |
dc.date.issued | 2017 | - |
dc.identifier.citation | Not Available | en_US |
dc.identifier.issn | Not Available | - |
dc.identifier.uri | http://krishi.icar.gov.in/jspui/handle/123456789/42344 | - |
dc.description | Not Available | en_US |
dc.description.abstract | Coconut (Cocos nuciferaL.) has global significance in agriculture and industries due to its nutritional andmedicinal properties. Coconut Root Wilt Disease (RWD) causes huge economic loss, thus molecularapproach for improved varieties is needed. Since whole genome sequence is unavailable, transcriptomicapproach is imperative for deciphering pathways as well as genic region marker discovery from con-trasting genotypes. This is thefirst report of RWD transcriptome database having candidate genes andpathway discovery along with genic simple sequence repeats, SNPs, indels to be used as functionaldomain markers. A relational database, CnTDB (http://webtom.cabgrid.res.in/cntdb/), based on three-tierarchitecture has been developed having 285235 transcripts with all blast information, annotations,pathways, 22021 DEGs, transcriptional factors, 10126 and 97117 SSR markers mined from DEGs anddenovotranscriptome assembly, respectively. Putative markers with primers can be valuable genomicresource in endeavor of RWD resistant variety development for higher coconut productivity. | en_US |
dc.description.sponsorship | Not Available | en_US |
dc.language.iso | English | en_US |
dc.publisher | Not Available | en_US |
dc.relation.ispartofseries | Not Available; | - |
dc.subject | Coconut | en_US |
dc.subject | Differentially expressed genes | en_US |
dc.subject | GO | en_US |
dc.subject | Markers | en_US |
dc.subject | RWD | en_US |
dc.subject | Transcriptome | en_US |
dc.title | Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB) | en_US |
dc.title.alternative | Not Available | en_US |
dc.type | Article | en_US |
dc.publication.projectcode | Not Available | en_US |
dc.publication.journalname | Physiological and Molecular Plant Pathology | en_US |
dc.publication.volumeno | 100 | en_US |
dc.publication.pagenumber | 255-263 | en_US |
dc.publication.divisionUnit | Not Available | en_US |
dc.publication.sourceUrl | http://www.sciencedirect.com/science/article/pii/S0885576517300693 | en_US |
dc.publication.authorAffiliation | ICAR::Indian Agricultural Statistics Research Institute | en_US |
dc.ICARdataUseLicence | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf | en_US |
dc.publication.naasrating | 7.65 | - |
Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
File | Description | Size | Format | |
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Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB) _ Elsevier Enhanced Reader.pdf | 8.35 MB | Adobe PDF | View/Open |
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