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http://krishi.icar.gov.in/jspui/handle/123456789/42868| Title: | MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation |
| Other Titles: | Not Available |
| Authors: | M. A. Iquebal Sarika Jaiswal Ajay Kumar Mahato Pawan K. Jayaswal U. B. Angadi Neeraj Kumar Nimisha Sharma Anand K. Singh Manish Srivastav Jai Prakash S. K. Singh Kasim Khan Rupesh K. Mishra Shailendra Rajan Anju Bajpai B. S. Sandhya Puttaraju Nischita K. V. Ravishankar M. R. Dinesh Anil Rai Dinesh Kumar Tilak R. Sharma Nagendra K. Singh |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::National Institute for Plant Biotechnology ICAR::Central Institute of Sub-tropical Horticulture ICAR::Indian Agricultural Statistics Research Institute ICAR::Indian Institute of Horticultural Research ICAR::Indian Agricultural Research Institute |
| Published/ Complete Date: | 2017-11-02 |
| Project Code: | Not Available |
| Keywords: | germplasm putative marker genomic resources phylogeography |
| Publisher: | Not Available |
| Citation: | Not Available |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Mango is one of the most important fruits of tropical ecological region of the world, well known for its nutritive value, aroma and taste. Its world production is >45MT worth >200 billion US dollars. Genomic resources are required for improvement in productivity and management of mango germplasm. There is no web-based genomic resources available for mango. Hence rapid and cost-efective high throughput putative marker discovery is required to develop such resources. RAD-based marker discovery can cater this urgent need till whole genome sequence of mango becomes available. Using a panel of 84 mango varieties, a total of 28.6 Gb data was generated by ddRAD-Seq approach on Illumina HiSeq 2000 platform. A total of 1.25 million SNPs were discovered. Phylogenetic tree using 749 common SNPs across these varieties revealed three major lineages which was compared with geographical locations. A web genomic resources MiSNPDb, available at http://webtom.cabgrid.res.in/mangosnps/ is based on 3-tier architecture, developed using PHP, MySQL and Javascript. This web genomic resources can be of immense use in the development of high density linkage map, QTL discovery, varietal diferentiation, traceability, genome fnishing and SNP chip development for future GWAS in genomic selection program. We report here world’s frst web-based genomic resources for genetic improvement and germplasm management of mango. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Article |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Scientific Reports |
| NAAS Rating: | 10 |
| Volume No.: | 7 |
| Page Number: | 14968 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | DOI:10.1038/s41598-017-14998-2 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/42868 |
| Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| MiSNPDb_ a web-based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation.pdf | 1.35 MB | Adobe PDF | View/Open |
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