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http://krishi.icar.gov.in/jspui/handle/123456789/43136| Title: | In-silico characterisation and comparative mapping of yellow stripe like transporters in five grass species |
| Other Titles: | Not Available |
| Authors: | M.G. Mallikarjuna T. Nepolean Shikha Mittal Firoz Hossain J.S. Bhat K.M. Manjaiah S.S. Marla Amitha Cr Mithra P.K. Agrawal A.R. Rao H.S. Gupta |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute |
| Published/ Complete Date: | 2016-05-01 |
| Project Code: | Not Available |
| Keywords: | In-silico analysis Iron and zinc transporters Selection pressure Synteny Yellow stripe like IRON UPTAKE FAMILY BIOFORTIFICATION MALNUTRITION MECHANISMS |
| Publisher: | INDIAN JOURNAL OF AGRICULTURAL SCIENCES; INDIAN COUNC AGRICULTURAL RES; KAB-1, NEW DELHI 110012, INDIA; NEW DELHI |
| Citation: | Not Available |
| Series/Report no.: | Not Available |
| Abstract/Description: | Iron (Fe) and Zinc (Zn) are the key elements required for many of the biological process in plants and animals. Transporter proteins are essential for uptake, transport and accumulation for Fe and Zn in plants. The present investigation was undertaken to study and compare the structural and functional diversity and evolutionary significance of the yellow stripe-like (YSL) transporters through in-silico tools in five species (barley, Brachypodium, foxtail millet, maize and rice) of Poaceae. One hundred and two YSL transporters collected from public databases were used in the analysis. All YSL transporters possessed PF03169 domain which belongs to the oligo peptide transporters (OPT) super family. Molecular weight of YSL proteins ranged from 11.10 to 84.70 kDa while pI values ranged from 4.99 to 11.64. Scondary structure analysis identified that, alpha helix and random coils were the most common structures of the YSL proteins. Phylogenetic analysis revealed that the YSL transporters are highly conserved in these five grass species. Comparative mapping of genes of YSL transporters showed maximum synteny between Brachypodium and barley (30%) followed by Brachypodium and rice (25%). Neutrality test has in fact revealed the positive or Darwinian selection on YSL transporters. The results of the present investigation provided a significant understanding of the structural and biological role of YSL transporters as well as the evolutionary pattern in Poaceae family. |
| Description: | Not Available |
| ISBN: | Not Available |
| ISSN: | 0019-5022 |
| Type(s) of content: | Article |
| Sponsors: | Department of Science and Technology, Government of IndiaDepartment of Science & Technology (India) [DST/INSPIRE/2011/IF110504]; ICAR-NPTC on Functional Genomics (Maize component: 21-22) |
| Language: | English |
| Name of Journal: | Indian Journal of Animal Sciences |
| NAAS Rating: | 6.21 |
| Volume No.: | 86 (5) |
| Page Number: | 621-627 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | DOI id: Not Available PubMed id: Not Available Web of Science ID: WOS:000376165400008 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/43136 |
| Appears in Collections: | AEdu-IASRI-Publication |
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