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Please use this identifier to cite or link to this item:
http://krishi.icar.gov.in/jspui/handle/123456789/44571
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DC Field | Value | Language |
---|---|---|
dc.contributor.author | Virupaksh U. Patil | en_US |
dc.contributor.author | G. Vanishree. | en_US |
dc.contributor.author | Hemant B. Kardile | en_US |
dc.contributor.author | Vikas Jindal | en_US |
dc.contributor.author | SK Dutta | en_US |
dc.contributor.author | K. K. Chaturvedi | en_US |
dc.contributor.author | S.K. Chakrabarti | en_US |
dc.date.accessioned | 2021-01-05T09:07:41Z | - |
dc.date.available | 2021-01-05T09:07:41Z | - |
dc.date.issued | 2016-05-02 | - |
dc.identifier.citation | Patil,VU, Vanishree, G, Kardile, HB, Jindal, V, Dutta, SK, Chaturvedi, KK and Chakrabarti, SK (2016). In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.). International Journal of Computational Bioinformatics and In Silico Modeling. 5(3):815-818. | en_US |
dc.identifier.uri | http://bioinfo.aizeonpublishers.net/content/2016/3/bioinfo815-818 | - |
dc.identifier.uri | http://krishi.icar.gov.in/jspui/handle/123456789/44571 | - |
dc.description | Not Available | en_US |
dc.description.abstract | Microsatellites, also known as simple sequence repeats (SSRs) or short tandem repeats (STRs), are repeating sequences of 2-6 base pairs of DNA known for the ubiquitous existence in both prokaryotic and eukaryotic genomes. These markers are crucial for the marker assisted breeding of any crops. Difficulties in coffee breeding and wanting of new cultivars resistance to diseases and pest has urged the global coffee breeders to complement the traditional breeding with molecula markers assisted breeding. The present study reveals genome-wide presence and distribution of the microsatellite markers in the coffee. A total of 25,574 protein coding genes are predicted from coffee 3,34,404 SSRs were present in the genome of which 12.1% in the compound form. SSRs present in the gene sequence were 45,115, but only 2150 of these were actual genic SSRs. The information genome-wide microsatellites in coffee and specially the genic SSRs can be used in coffee breeding. | en_US |
dc.description.sponsorship | Not Available | en_US |
dc.language.iso | English | en_US |
dc.publisher | AIZEON | en_US |
dc.relation.ispartofseries | Not Available; | - |
dc.subject | Coffee | en_US |
dc.subject | Genome-wide | en_US |
dc.subject | Microsatellite | en_US |
dc.subject | Marker | en_US |
dc.subject | in silico | en_US |
dc.title | In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.) | en_US |
dc.title.alternative | Not Available | en_US |
dc.type | Research Paper | en_US |
dc.publication.projectcode | Not Available | en_US |
dc.publication.journalname | International Journal of Computational Bioinformatics and In Silico Modeling | en_US |
dc.publication.volumeno | 5(3) | en_US |
dc.publication.pagenumber | 815-818 | en_US |
dc.publication.divisionUnit | Not Available | en_US |
dc.publication.sourceUrl | http://bioinfo.aizeonpublishers.net/content/2016/3/bioinfo815-818 | en_US |
dc.publication.authorAffiliation | ICAR::Central Potato Research Institute | en_US |
dc.publication.authorAffiliation | Punjab Agriculture University, Ludhiana-141 004 (Punjab), India | en_US |
dc.publication.authorAffiliation | ICAR::Research Complex for NEH Region | en_US |
dc.publication.authorAffiliation | ICAR::Indian Agricultural Statistics Research Institute | en_US |
dc.ICARdataUseLicence | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf | en_US |
dc.publication.naasrating | Not Available | - |
Appears in Collections: | AEdu-IASRI-Publication |
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