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http://krishi.icar.gov.in/jspui/handle/123456789/44701
Title: | In-silico analysis and homology modelling of coat-protein of Mungbean Yellow Mosaic India Virus |
Other Titles: | Not Available |
Authors: | Navneet Kumar Yadav Sarika M. A. Iquebal Mohd. Akram |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | Chhatrapati Shahu Ji Maharaj University ICAR::Indian Institute of Pulses Research |
Published/ Complete Date: | 2011-04-23 |
Project Code: | Not Available |
Keywords: | ESyPred Homology modelling ModWeb Mungbean yellow mosaic India virus Ramachandran plot Swiss Model |
Publisher: | Not Available |
Citation: | In-silico analysis and homology modelling of coat-protein of Mungbean Yellow Mosaic India Virus (2011). Navneet Kumar Yadav, Sarika, M.A. Iquebal and Mohd. Akram. Journal of Food Legumes 24(2): 138-141 |
Series/Report no.: | Not Available; |
Abstract/Description: | Mungbean is affected by several diseases incited by viruses, fungi, bacteria and nematodes. In this study, coat-protein sequence was analyzed and modelled to explore properties and structure of Mungbean yellow mosaic India virus (MYMIV). Since no structural information is available for majority of pro tein sequenc es a vailable in Protein Data Bank, computational methods for protein structure prediction have been of much interest in recent years. Physico-chemical properties of the protein under study were computed. The grand average of hydropathy (GRAVY) value and instability index were found to be -0.646 and 45.75, respectively, supporting the protein to have better interaction with water. Comparative homology modelling was performed with ModWeb, ESyPred and Swiss Model. It was observed that the model generated by ModWeb was most acceptable with 90.2% of the residues in most favoured region. The model was validated using Structural Analysis and Verification Server (SAVS). Coat-protein struc ture of MYMIV obtained throug h computational modelling was found congruent with their protein structure obtained by X-ray crystallography or NMR. |
Description: | Not Available |
ISSN: | Not Available |
Type(s) of content: | Article |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | Journal of Food Legumes |
NAAS Rating: | 4.82 |
Volume No.: | 24(2) |
Page Number: | 138-141 |
Name of the Division/Regional Station: | Not Available |
Source, DOI or any other URL: | Not Available |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/44701 |
Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
File | Description | Size | Format | |
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In-silico analysis and homology modelling of coat protein of Mungbean yellow mosaic India virus.pdf | 300.33 kB | Adobe PDF | View/Open |
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