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http://krishi.icar.gov.in/jspui/handle/123456789/51556
Title: | Salt specific transcriptomic profiling in halophyte Dichanthium annulatum |
Other Titles: | Not Available |
Authors: | Anita Mann, Naresh Kumar, Ashwani Kumar, Charu Lata, Arvind Kumar, Babu Lal Meena, Dwijesh Mishra, Monendra Grover, Sonam Gaba, |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | ICAR::Central Soil Salinity Research Institute |
Published/ Complete Date: | 2020-09-24 |
Project Code: | NASF-ABP-6027 |
Keywords: | halophytes, salinity, transcriptomics |
Publisher: | NCBI |
Citation: | https://www.ncbi.nlm.nih.gov/bioproject/665324 |
Series/Report no.: | Not Available; |
Abstract/Description: | A moderately salt tolerant halophytic plant, Dichanthium annulatum was selected for transcriptional profiling. Also known as marvel grass or Hindi grass, it is tolerant of varied soil conditions, including soils high in clay and sand, poorly drained soils, and soils that are somewhat alkaline and saline. It has been reported to tolerate salinity upto EC 30 dS/m (~ 300 mM NaCl). Dichanthium leaves were harvested at vegetative stage from salt treated and untreated plants (control) for RNA isolation and further transcriptomics. An average of 42.88 million raw sequencing reads (for control and stress samples) were obtained on Illumina HiSeq sequencer. Differential gene expression was analyzed between control and salt treated samples. Raw data generated on sequencer was checked for the quality using FastQC and pre processed with Cutadapt. DESeq, R package, was used for differential expression analysis. |
Description: | Not Available |
ISSN: | Not Available |
Type(s) of content: | Dataset |
Sponsors: | ICAR-NASF, New Delhi |
Language: | English |
Name of Journal: | NCBI |
Volume No.: | Not Available |
Page Number: | Not Available |
Name of the Division/Regional Station: | Division of Crop Improvement |
Source, DOI or any other URL: | https://www.ncbi.nlm.nih.gov/bioproject/665324 |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/51556 |
Appears in Collections: | NRM-CSSRI-Publication |
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