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http://krishi.icar.gov.in/jspui/handle/123456789/61198
Title: | Draft genome sequence of Colletotrichum falcatum – a prelude on screening of red rot pathogen in sugarcane |
Other Titles: | Not Available |
Authors: | Rasappa Viswanathan, Chandrasekaran Naveen Prasanth, Palaniyandi Malathi, Amalraj Ramesh Sundar |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | ICAR::Sugarcane Breeding Institute |
Published/ Complete Date: | 2016-01-01 |
Project Code: | Not Available |
Keywords: | Genetic complexities, Phylogenomic analysis, NGS Technology |
Publisher: | Ivyspring International Publisher |
Citation: | 17 |
Series/Report no.: | Not Available; |
Abstract/Description: | Colletotrichum falcatum, a concealed fungal ascomycete which causes red rot in sugarcane. It infects economically important stalk tissues, considered as store house of sugar in sugarcane. The study is to find genetic complexities of C. falcatum in establishing this as a stalk infecting pathogen and to decipher the unique lifestyle of this pathogen using NGS technology. Here we report the genome sequence of C. falcatum of ~48.2 Mb with 12270 genes were present which were further compared with other Colletotrichum species publicly available. Phylogenomic analysis indicated that C. falcatum is closely related to C. graminicola (the causal organism of anthracnose in maize). This results brought a new vision to explore the lifestyle of this unique pathogen which infects sugarcane stalk alone as well and helps us to understand the pathogen biology. |
Description: | Not Available |
ISSN: | 1839-9940 |
Type(s) of content: | Research Paper |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | Journal of Genomics |
Volume No.: | 4 |
Page Number: | 1-3 |
Name of the Division/Regional Station: | Division of crop protection |
Source, DOI or any other URL: | doi: 10.7150/jgen.13585 |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/61198 |
Appears in Collections: | CS-SBI-Publication |
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