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http://krishi.icar.gov.in/jspui/handle/123456789/68518| Title: | A Web Tool for Consensus Gene Regulatory Network Construction |
| Other Titles: | Not Available |
| Authors: | Chiranjib Sarkar Rajender Parsad D.C. Mishra Anil Rai |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute |
| Published/ Complete Date: | 2021-11-24 |
| Project Code: | Not Available |
| Keywords: | Web tool PHP Fisher’s weighted method Consensus approach gene regulatory networG |
| Publisher: | Frontiers in Genetics: Computational Genomics |
| Citation: | Chiranjib Sarkar, Rajender Parsad, D.C. Mishra and Anil Rai (2021). A Web Tool for Consensus Gene Regulatory Network Construction. Frontiers in Genetics, 12: 745827. https://doi.org/10.3389/fgene.2021.745827 |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Gene regulatory network (GRN) construction involves various steps of complex computational steps. This step-by-step procedure requires prior knowledge of programming languages such as R. Development of a web tool may reduce this complexity in the analysis steps which can be easy accessible for the user. In this study, a web tool for constructing consensus GRN by combining the outcomes obtained from four methods, namely, correlation, principal component regression, partial least square, and ridge regression, has been developed. We have designed the web tool with an interactive and user-friendly web page using the php programming language.We have used R script for the analysis steps which run in the background of the user interface. Users can upload gene expression data for constructing consensus GRN. The output obtained from analysis will be available in downloadable form in the result window of the web tool. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Frontiers in Genetics |
| Journal Type: | NAAS |
| NAAS Rating: | 9.26 9.26 |
| Volume No.: | 12 |
| Page Number: | Not Available |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | https://doi.org/10.3389/fgene.2021.745827 https://www.frontiersin.org/articles/10.3389/fgene.2021.745827/full |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/68518 |
| Appears in Collections: | AEdu-IASRI-Publication |
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