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http://krishi.icar.gov.in/jspui/handle/123456789/70365| Title: | Fruit transcriptional profiling of the contrasting genotypes for shelf life reveals the key candidate genes and molecular pathways regulating post-harvest biology in cucumber |
| Other Titles: | Not Available |
| Authors: | N. Pradeepkumara Parva Kumar Sharma A.D. Munshi T.K. Behera Reeta Bhatia Khushboo Kumari Jogendra Singh Sarika Jaiswal Mir Asif Iquebal Ajay Arora Anil Rai Dinesh Kumar R.C. Bhattacharya S.S. Dey |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute ICAR::Indian Agricultural Research Institute ICAR::National Institute for Plant Biotechnology |
| Published/ Complete Date: | 2022-03-01 |
| Project Code: | Not Available |
| Keywords: | Cucumber Developmental stages Shelf life RNA-seq GO analysis KEGG pathways Variant identification Gene regulatory networks Web resource |
| Publisher: | Elsevier |
| Citation: | N. Pradeepkumara, Parva Kumar Sharma, A.D. Munshi, T.K. Behera, Reeta Bhatia, Khushboo Kumari, Jogendra Singh, Sarika Jaiswal, Mir Asif Iquebal, Ajay Arora, Anil Rai, Dinesh Kumar, R.C. Bhattacharya, S.S. Dey, Fruit transcriptional profiling of the contrasting genotypes for shelf life reveals the key candidate genes and molecular pathways regulating post-harvest biology in cucumber, Genomics, Volume 114, Issue 2, 2022, 110273, ISSN 0888-7543, https://doi.org/10.1016/j.ygeno.2022.110273.Not Available |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Cucumber fruits are perishable in nature and become unfit for market within 2–3 days of harvesting. A natural variant, DC-48 with exceptionally high shelf life was developed and used to dissect the genetic architecture and molecular mechanism for extended shelf life through RNA-seq for first time. A total of 1364 DEGs were identified and cell wall degradation, chlorophyll and ethylene metabolism related genes played key role. Polygalacturunase (PG), Expansin (EXP) and xyloglucan were down regulated determining fruit firmness and retention of fresh green colour was mainly attributed to the low expression level of the chlorophyll catalytic enzymes (CCEs). Gene regulatory networks revealed the hub genes and cross-talk associated with wide variety of the biological processes. Large number of SSRs (21524), SNPs (545173) and InDels (126252) identified will be instrumental in cucumber improvement. A web genomic resource, CsExSLDb developed will provide a platform for future investigation on cucumber post-harvest biology. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Genomics |
| Volume No.: | 114(2) |
| Page Number: | Not Available |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | https://doi.org/10.1016/j.ygeno.2022.110273 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/70365 |
| Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| FRUITT~1.PDF | 13.73 MB | Adobe PDF | View/Open |
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