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http://krishi.icar.gov.in/jspui/handle/123456789/71623| Title: | Comparative analysis of genome browser for visualization of genetic variants. |
| Other Titles: | Not Available |
| Authors: | Vivek Kumar Anu Sharma SB Lal KK Chaturvedi Md. Samir Farooqi DC Mishra Lakshmi Sonkusale Rajeev Kumar |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute |
| Published/ Complete Date: | 2022-02-23 |
| Project Code: | Not Available |
| Keywords: | Genetic variants SNPs visualization web |
| Publisher: | Not Available |
| Citation: | Vivek Kumar, Anu Sharma, SB Lal, KK Chaturvedi, Md. Samir Farooqi, DC Mishra, Lakshmi Sonkusale and Rajeev Kumar (2022). Comparative analysis of genome browser for visualization of genetic variants, The Pharma Innovations, 11(3), 384-388. |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Genetic variations are used to describe the variations present in the DNA sequence of an individual’s genome. Single Nucleotide Polymorphisms (SNPs) is the commonly used genetic variant for comparative genomics. Each SNP represents a difference in a single DNA base namely Adenine (A), Thymine (T), Cytosine (C) or Guanine (G) in DNA. Similarly, there are many other genetic variants namely Simple Sequence Repeat (SSR), Copy Number Variations (CNV), In Dels etc. At present, these genetic variants have been identified using various methods. These identified genetic variants are scattered at different locations in a genome and are also explored in isolation. A number of Genome browsers are used for the visualization of these variants on web. Therefore, it is required to compare the features of these browsers in order to select a best browser in a given situation. This paper describes the comparison of various features of important genome browsers and a web based prototype developed for visualization of SNPs using HTML, CSS, JavaScript, JSP and JBrowse. This tool will help users to access, addition of other genetic variants and its associated information through a single window interface. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Review Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | The Pharma Innovation Journal |
| NAAS Rating: | 5.23 |
| Volume No.: | 11(3) |
| Page Number: | 384-388 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | Not Available |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/71623 |
| Appears in Collections: | AEdu-IASRI-Publication |
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