ICAR Research Data Repository for Knowledge Management
Preliminary functional annotation of the sheep genome
CSIRO RDS Repository
View Archive Info| Field | Value | |
| Title |
Preliminary functional annotation of the sheep genome
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| Creator |
Marina Naval Sanchez
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| Subject |
Genomics
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| Description |
In the absence of detailed functional annotation for any livestock genome, we used comparative genomics to predict ovine regulatory elements using human data. Reciprocal liftOver was used to predict the ovine genome location of ENCODE promoters and enhancers, along with 12 chromatin states built using 127 diverse epigenome. Here we make available the following files: a) Sheep_epigenome_predicted_features.tar.gz: contains the final reciprocal best alignment from ENCODE proximal as well as chromHMM ROADMAP features. The result of reciprocal liftOver. b) liftOver_sheep_temporary_files.tar.gz: We have added a new tar file with liftOver temporary files containing i) LiftOver temporary files mapping human to sheep, ii) LiftOver temporary files mapping sheep back to human and iii) Dictionary files containing the link between human to sheep coordinates for exact best-reciprocal files. |
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| Publisher |
CSIRO
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| Contributor |
Quan Nguyen
Sean McWilliam Laercio Porto Neto Toni Reverter-Gomez James Kijas |
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| Date |
2017-11-09
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| Type |
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| Identifier |
csiro:26773
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| Language |
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