Rapid detection of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum) by loop-mediated isothermal amplification (LAMP)
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Title |
Rapid detection of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum) by loop-mediated isothermal amplification (LAMP)
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Creator |
Not Available
A.I.Bhat A.Siljo K.P.Deeshma |
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Subject |
cucumber mosaic virus, piper yellow mottle virus, isothermal detection, sensitivity, PCR
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Description |
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The loop-mediated isothermal amplification (LAMP) assay for Piper yellow mottle virus and the reverse transcription (RT) LAMP assay for Cucumber mosaic virus each consisted of a set of five primers designed against the conserved sequences in the viral genome. Both RNA and DNA isolated from black pepper were used as a template for the assay. The results were assessed visually by checking turbidity, green fluorescence and pellet formation in the reaction tube and also by gel electrophoresis. The assay success fully detected both viruses in infected plants whereas no cross-reactions were recorded with healthy plants. Optimum conditions for successful amplification were determined in terms of the concentrations of magnesium sulphate and betaine, temperature, and duration. The detection limit for both LAMP and RT-LAMP was up to 100 times that for conventional PCR and up to one-hundredth of that for real-time PCR. The optimal conditions arrived at were validated by testing field samples of infected vines of three species from different regions Not Available |
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Date |
2021-07-28T11:14:21Z
2021-07-28T11:14:21Z 2013-06-19 |
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Type |
Research Paper
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Identifier |
Bhat, A.I., Siljo, A. and Deeshma, K.P. 2013. Rapid detection of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum) by loop-mediated isothermal amplification (LAMP). Journal of Virological Methods 193: 190-196.
Not Available http://krishi.icar.gov.in/jspui/handle/123456789/50827 |
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Language |
English
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Relation |
Not Available;
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Publisher |
Elseveir
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