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http://krishi.icar.gov.in/jspui/handle/123456789/18785| Title: | Comparative structural analysis of Dep1 protein in Oryza sativa. |
| Other Titles: | Not Available |
| Authors: | Swain P Behera L |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::National Rice Research Institute |
| Published/ Complete Date: | 2014-12-24 |
| Project Code: | Not Available |
| Keywords: | Oryza sativa, OsCKX2 protein, 3D structure, structure prediction, homology |
| Publisher: | STM Journals |
| Citation: | Not Available |
| Series/Report no.: | Not Available; |
| Abstract/Description: | OsCKX2 is an important protein of Oryza sativa which helps in high grain production. The objective is to find out the structure of protein and to represent the best 3D model by using insilico analysis. In Oryza sativa the OsCKX2 is homologous to maize (zea mays) cytokine oxidasedehydrogenase, which is responsible for plant growth and development. The following study was obtained by predicting the 3D structure of OsCKX2 in Oryza sativau using homology modeling concept with the help of bioinformatic tools i.e, 3D-JIGSAW, SWISS-MODEL, MODELLER9.12 and PHYRE2. The 3D structures were further evaluated and steriochemical analysis was done by using RAMPAGE server for Ramachadran plot analysis. The best model was selected on the basis of Z-score and 3D-1D score. |
| Description: | Not Available |
| ISSN: | 2393-8722 |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Research & Reviews: A Journal of Bioinformatics |
| Volume No.: | 1 |
| Page Number: | 43-47 |
| Name of the Division/Regional Station: | Crop Improvement Division |
| Source, DOI or any other URL: | www.stmjournals.com |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/18785 |
| Appears in Collections: | CS-NRRI-Publication |
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