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http://krishi.icar.gov.in/jspui/handle/123456789/44330| Title: | Identification and characterization of trait-specific SNPs using ddRAD sequencing in water buffalo |
| Other Titles: | Not Available |
| Authors: | Dwijesh Chandra Mishra Poonam Sikka Sunita Yadava Jyotika Bhatia Shyam Sundar Paul Jerome Andonissamy Inderjeet Singh Abhigyan Nath Neeraj Budhlakoti A.R. Rao Anil Rai K. K. Chaturvedi |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute ICAR::Central Institute for Research on Buffaloes |
| Published/ Complete Date: | 2020-04-19 |
| Project Code: | Not Available |
| Keywords: | Buffalo ddRAD SNPs Annotation GO terms Synonymous SNP Non-synonymous SNP |
| Publisher: | Elsevier Inc. |
| Citation: | Mishra, D.C., Sikka, P., Yadav, S., Bhati, J., Paul, S.S., Jerome, A., Singh, I., Nath, A., Budhlakoti, N., Rao, A.R., Rai, A., Chaturvedi, K.K.* (2020). Identification and characterization of trait-specific SNPs using ddRAD sequencing in water buffalo. Genomics , 112(5), 3571-3578. |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Single Nucleotide Polymorphism (SNP) is one of the important molecular markers widely used in animal breeding program for improvement of any desirable genetic traits. Considering this, the present study was carried out to identify, annotate and analyze the SNPs related to four important traits of buffalo viz. milk volume, age at first calving, post-partum cyclicity and feed conversion efficiency. We identified 246,495, 168,202, 74,136 and 194,747 genome-wide SNPs related to mentioned traits, respectively using ddRAD sequencing technique based on 85 samples of Murrah Buffaloes. Distribution of these SNPs were highest (61.69%) and lowest (1.78%) in intron and exon regions, respectively. Under coding regions, the SNPs for the four traits were further classified as synonymous (4697) and non-synonymous (3827). Moreover, Gene Ontology (GO) terms of identified genes assigned to various traits. These characterized SNPs will enhance the knowledge of cellular mechanism for enhancing productivity of water buffalo through molecular breeding. |
| Description: | Not Available |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Genomics |
| NAAS Rating: | 12.21 |
| Volume No.: | 112 |
| Page Number: | 3571-3578 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | https://doi.org/10.1016/j.ygeno.2020.04.012 |
| URI: | https://doi.org/10.1016/j.ygeno.2020.04.012 http://krishi.icar.gov.in/jspui/handle/123456789/44330 |
| Appears in Collections: | AEdu-IASRI-Publication |
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