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http://krishi.icar.gov.in/jspui/handle/123456789/5841| Title: | Trends in the codon usage patterns of Chromohalobacter salexigens genes |
| Other Titles: | Not Available |
| Authors: | R. Sanjukta M.S. Farooqi N. Sharma Anil Rai Dwijesh C. Mishra D.P. Singh |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute ICAR::National Bureau of Agriculturally Important Micro-organisms |
| Published/ Complete Date: | 2012 |
| Project Code: | Not Available |
| Keywords: | Codon usage pattern Correspondence analysis Halophilic bacteria Mutational bias Relative synonymous codon usage |
| Publisher: | Not Available |
| Citation: | Not Available |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Chromohalobacter salexigens, a Gammaproteobacterium belonging to the family Halomonadaceae, shows a broad salinity range for growth. In order to reveal the factors influencing architecture of protein coding genes in C. salexigens, pattern of synonymous codon usage bias has been investigated. Overall codon usage analysis of the microorganism revealed that C and G ending codons are predominantly used in all the genes which are indicative of mutational bias. Multivariate statistical analysis showed that the genes are separated along the first major explanatory axis according to their expression levels and their genomic GC content at the synonymous third positions of the codons. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Research Paper |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Not Available |
| NAAS Rating: | Not Available |
| Volume No.: | 8(22) |
| Page Number: | 1087-1095 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | http://10.6026/97320630081087 https://www.ncbi.nlm.nih.gov/pubmed/23251043 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/5841 |
| Appears in Collections: | AEdu-IASRI-Publication |
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