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http://krishi.icar.gov.in/jspui/handle/123456789/1507| Title: | Complete genome sequence of a banana bract mosaic virus isolate infecting the French plantain cv. Nendran in India. |
| Authors: | Balasubramanian V and R. Selvarajan. |
| Published/ Complete Date: | 2012-02-01 |
| Keywords: | Complete genome sequence, banana bract mosaic virus, French plantain cv. Nendran, banana, |
| Publisher: | Springer Link |
| Citation: | 7 |
| Abstract/Description: | The first complete genome sequence of an Indian isolate (TRY) of Banana bract mosaic virus (BBrMV) was determined following virus RNA extraction from the French plantain cv. Nendran (AAB). The complete genome was 9711 nucleotides excluding the poly(A) tail and had a genome organization similar to that of a Philippine (PHI) isolate characterized earlier. When compared to BBrMV-PHI, the complete genome sequence of BBrMVTRY was 94% identical at the nucleotide level and its ten mature proteins had amino acid sequence identities ranging from 88 to 98%. Phylogenetic analysis suggests that the BBrMV-TRY isolate is closely related to the BBrMV-PHI isolate. |
| Description: | Neighbor-joining tree based on the deduced amino acid sequences of the BBrMV-TRY (HM131454) coat protein with other BBrMV isolates. Bootstrap analysis was applied using 1000 replicates. The scale bar represents a genetic distance of 0.05. The phylogenetic tree was generated using MEGA4 and the neighbor-joining algorithm. The distances computed using the Poisson correction method were derived from a multiple alignment using ClustalW. The abbreviations of the names of the isolates included in the analysis and their corresponding accession numbers (in parentheses) are as follows. PHI-1, Philippines (AFO71590); PHI-2, Philippines (AFO71585); PHI-3, Philippines (AFO71586); PHI-4, Philippines (EU414267); PHI-5, Philippines (DQ851496); WS-1, WesternSamoa (AFO71587); VT-1, Vietnam (AFO71588); TH-1, Thailand (AFO71589); IND-1, India, Coimbatore (AFO71582); IND-2, India, Coimbatore (AFO71583); IND-3, India, Tiruchchirappalli (AFO71584); IND-4, India (EU699770); IND-5, India, Tiruchchirappalli (EU009210); IND-6, India, Coimbatore (AY494979); IND-7, India, Andhra Pradesh (AY953427); IND-8, India, Andhra Pradesh (HM348778); IND-9, India, Andhra Pradesh (HM348779); IND-10, India, Andhra Pradesh (HM348780); IND-11, India, Andhra Pradesh (HM348781); IND-12, India, Andhra Pradesh (HM348782); IND-13, India, Karnataka (EF654655). The tree was rooted to potato virus Y (PVY; NC001616) |
| Type(s) of content: | Research Paper |
| Language: | English |
| Name of Journal: | Archives of Virology |
| NAAS Rating: | 8.24 |
| Volume No.: | 157(2) |
| Page Number: | 397-400 |
| Name of the Division/Regional Station: | Plant Virology |
| Source, DOI or any other URL: | http://link.springer.com/article/10.1007%2Fs00705-011-1179-5#/page-1 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/1507 |
| Appears in Collections: | HS-NRCB-Publication |
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|---|---|---|---|---|
| art%3A10.1007%2Fs00705-011-1179-5.pdf | 164.68 kB | Adobe PDF | View/Open |
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