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Please use this identifier to cite or link to this item:
http://krishi.icar.gov.in/jspui/handle/123456789/17529
Full metadata record
DC Field | Value | Language |
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dc.contributor.author | REENA ROSY THOMAS, M. K. CHANDRA PRAKASH, M. KRISHNA REDDY, RIAZ MAHMOOD AND PAPIYA MONDAL | en_US |
dc.date.accessioned | 2019-03-20T06:32:50Z | - |
dc.date.available | 2019-03-20T06:32:50Z | - |
dc.date.issued | 2017 | - |
dc.identifier.citation | Not Available | en_US |
dc.identifier.issn | Not Available | - |
dc.identifier.uri | http://krishi.icar.gov.in/jspui/handle/123456789/17529 | - |
dc.description | Not Available | en_US |
dc.description.abstract | Plants are exposed to a wide range of stresses and they respond to these stressed conditions by the activation of stress responsive genes. Microsatellites occur at thousands of locations in expressed regions, additionally, they have a higher mutation rate than other areas of DNA leading to genetic markers. A computational method was developed to capture exact repeat motifs in EST sequences of Solanum melongena and extract the sequences. This mathematical algorithm based repeat detection program searches for perfect repeats in the EST sequences without the need to specify the pre-defined repeat pattern for di, tri, tetra-, upto octa repeat with the exception of mono nucleotides. Hexa repeat motifs were abundantly available followed by tetra and di repeats. The identified EST derived markers with repeat motif can be used to identify the precise inheritance pattern of the expressed region. The redundant ESTs were filtered and 121 unique ESTs in S. melongena were found to have potential markers. These were spanned across 19 major proteins superfamilies having conserved domains associated with abiotic stress tolerance. These robust and potential EST derived markers are linked to genes that encode for specific traits providing tolerance against abiotic stresses which is useful in marker-assisted breeding programs. | en_US |
dc.description.sponsorship | Not Available | en_US |
dc.language.iso | English | en_US |
dc.publisher | National Environmentalists Association | en_US |
dc.relation.ispartofseries | Not Available; | - |
dc.subject | Abiotic stress, Computational methods, EST sequences, Markers, Solanum melongena | en_US |
dc.title | EST linked markers in Solanum melongena responsive to abiotic stress using computational methods | en_US |
dc.title.alternative | Not Available | en_US |
dc.type | Journal | en_US |
dc.publication.projectcode | HORTIIHRCIL2015160(4) | en_US |
dc.publication.journalname | The Ecoscan | en_US |
dc.publication.volumeno | 11(1&2) | en_US |
dc.publication.pagenumber | 45-49 | en_US |
dc.publication.divisionUnit | Division of Social Sciences and Training | en_US |
dc.publication.sourceUrl | Not Available | en_US |
dc.publication.authorAffiliation | ICAR::Indian Institute of Horticultural Research | en_US |
dc.ICARdataUseLicence | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf | en_US |
Appears in Collections: | HS-IIHR-Publication |
Files in This Item:
File | Description | Size | Format | |
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Ecoscan-Reena.pdf | 544.39 kB | Adobe PDF | View/Open |
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