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http://krishi.icar.gov.in/jspui/handle/123456789/42344| Title: | Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB) |
| Other Titles: | Not Available |
| Authors: | Sandeep Kumar Verma Rahul Singh Jasrotia M. A. Iquebal Sarika Jaiswal U.B. Angadi Anil Rai Dinesh Kumar |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR::Indian Agricultural Statistics Research Institute |
| Published/ Complete Date: | 2017 |
| Project Code: | Not Available |
| Keywords: | Coconut Differentially expressed genes GO Markers RWD Transcriptome |
| Publisher: | Not Available |
| Citation: | Not Available |
| Series/Report no.: | Not Available; |
| Abstract/Description: | Coconut (Cocos nuciferaL.) has global significance in agriculture and industries due to its nutritional andmedicinal properties. Coconut Root Wilt Disease (RWD) causes huge economic loss, thus molecularapproach for improved varieties is needed. Since whole genome sequence is unavailable, transcriptomicapproach is imperative for deciphering pathways as well as genic region marker discovery from con-trasting genotypes. This is thefirst report of RWD transcriptome database having candidate genes andpathway discovery along with genic simple sequence repeats, SNPs, indels to be used as functionaldomain markers. A relational database, CnTDB (http://webtom.cabgrid.res.in/cntdb/), based on three-tierarchitecture has been developed having 285235 transcripts with all blast information, annotations,pathways, 22021 DEGs, transcriptional factors, 10126 and 97117 SSR markers mined from DEGs anddenovotranscriptome assembly, respectively. Putative markers with primers can be valuable genomicresource in endeavor of RWD resistant variety development for higher coconut productivity. |
| Description: | Not Available |
| ISSN: | Not Available |
| Type(s) of content: | Article |
| Sponsors: | Not Available |
| Language: | English |
| Name of Journal: | Physiological and Molecular Plant Pathology |
| NAAS Rating: | 7.65 |
| Volume No.: | 100 |
| Page Number: | 255-263 |
| Name of the Division/Regional Station: | Not Available |
| Source, DOI or any other URL: | http://www.sciencedirect.com/science/article/pii/S0885576517300693 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/42344 |
| Appears in Collections: | AEdu-IASRI-Publication |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB) _ Elsevier Enhanced Reader.pdf | 8.35 MB | Adobe PDF | View/Open |
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