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http://krishi.icar.gov.in/jspui/handle/123456789/44571
Title: | In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.) |
Other Titles: | Not Available |
Authors: | Virupaksh U. Patil G. Vanishree. Hemant B. Kardile Vikas Jindal SK Dutta K. K. Chaturvedi S.K. Chakrabarti |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | ICAR::Central Potato Research Institute Punjab Agriculture University, Ludhiana-141 004 (Punjab), India ICAR::Research Complex for NEH Region ICAR::Indian Agricultural Statistics Research Institute |
Published/ Complete Date: | 2016-05-02 |
Project Code: | Not Available |
Keywords: | Coffee Genome-wide Microsatellite Marker in silico |
Publisher: | AIZEON |
Citation: | Patil,VU, Vanishree, G, Kardile, HB, Jindal, V, Dutta, SK, Chaturvedi, KK and Chakrabarti, SK (2016). In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.). International Journal of Computational Bioinformatics and In Silico Modeling. 5(3):815-818. |
Series/Report no.: | Not Available; |
Abstract/Description: | Microsatellites, also known as simple sequence repeats (SSRs) or short tandem repeats (STRs), are repeating sequences of 2-6 base pairs of DNA known for the ubiquitous existence in both prokaryotic and eukaryotic genomes. These markers are crucial for the marker assisted breeding of any crops. Difficulties in coffee breeding and wanting of new cultivars resistance to diseases and pest has urged the global coffee breeders to complement the traditional breeding with molecula markers assisted breeding. The present study reveals genome-wide presence and distribution of the microsatellite markers in the coffee. A total of 25,574 protein coding genes are predicted from coffee 3,34,404 SSRs were present in the genome of which 12.1% in the compound form. SSRs present in the gene sequence were 45,115, but only 2150 of these were actual genic SSRs. The information genome-wide microsatellites in coffee and specially the genic SSRs can be used in coffee breeding. |
Description: | Not Available |
Type(s) of content: | Research Paper |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | International Journal of Computational Bioinformatics and In Silico Modeling |
NAAS Rating: | Not Available |
Volume No.: | 5(3) |
Page Number: | 815-818 |
Name of the Division/Regional Station: | Not Available |
Source, DOI or any other URL: | http://bioinfo.aizeonpublishers.net/content/2016/3/bioinfo815-818 |
URI: | http://bioinfo.aizeonpublishers.net/content/2016/3/bioinfo815-818 http://krishi.icar.gov.in/jspui/handle/123456789/44571 |
Appears in Collections: | AEdu-IASRI-Publication |
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