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http://krishi.icar.gov.in/jspui/handle/123456789/49460| Title: | HRE Finder: A Tool for Quarrying Hypoxia-Response Element in Genomic Sequences |
| Other Titles: | Not Available |
| Authors: | Iliyas, R. N.S. Nagpure P. Srivastava A.K. Pathak R. Kumar V. S. Baisvar M. Singh B. Kushwaha |
| ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
| Author's Affiliated institute: | ICAR- National Bureau of Fish Genetic Resources, Lucknow AMITY Institute of Biotechnology, AMITY University Uttar Pradesh, Lucknow ICAR- Central Institute of Fisheries Education, Mumbai |
| Published/ Complete Date: | 2017-07-10 |
| Project Code: | Not Available |
| Keywords: | Database Hypoxia inducible factor Hypoxia response element Hypoxia Transcription Gene Enhancer Search algorithm |
| Publisher: | Excellent Publishers |
| Citation: | Iliyas Rashid, Naresh Sahebrao Nagpure, Prachi Srivastava, Ajey Kumar Pathak, Ravindra Kumar, Vishwamitra Singh Baisvar, Mahender Singh and Basdeo Kushwaha. 2017. HRE Finder: A Tool for Quarrying Hypoxia-Response Element in Genomic Sequences.Int.J.Curr.Microbiol.App.Sci. 6(7): 1580-1586. doi: https://doi.org/10.20546/ijcmas.2017.607.190 |
| Series/Report no.: | Not Available; |
| Abstract/Description: | During hypoxia, the hypoxia inducible factor (HIF) binds to hypoxia-response elements (HRE) and induces the expression of hypoxia-inducible genes (HIG). A functionally active HRE typically contains an adjacent hypoxia ancillary sequence (HAS) in its downstream within the space of 7-15 nt. Here, a computational tool 'HRE Finder' is discussed using an example data set. The tool provides the ability for mining canonical HREs and predicting functional HREs in the upstream region of genes, which can be an indispensable tool for genome-wide analysis and identification of hypoxia inducible genes in vertebrates. |
| Description: | Not Available |
| ISSN: | 2319-7706 |
| Type(s) of content: | Research Paper |
| Sponsors: | CABin, ICAR-IASRI, New Delhi. |
| Language: | English |
| Name of Journal: | International Journal of Current Microbiology and Applied Sciences |
| Journal Type: | A multidisciplinary peer-reviewed journal aims to publish all the latest and outstanding research articles. Review and letters in all areas of major importance to techniques of microbiology and applied research with publishes high quality of review and research articles on novel aspects of Microbiology including Environmental, Food, Agricultural, Medical, Pharmaceutical, Veterinary, Soil, Water and Biodeterioration |
| Volume No.: | 6(7) |
| Page Number: | 1580-1586 |
| Name of the Division/Regional Station: | Molecular Biology and Biotechnology Division |
| Source, DOI or any other URL: | 10.20546/ijcmas.2017.607.190 https://doi.org/10.20546/ijcmas.2017.607.190 |
| URI: | http://krishi.icar.gov.in/jspui/handle/123456789/49460 |
| Appears in Collections: | FS-NBFGR-Publication |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| HREFinder-1.pdf | 496.32 kB | Adobe PDF | View/Open |
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