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Title: | RNA-seq analysis reveals an early defense response to tomato leaf curl New Delhi virus in potato cultivar Kufri Bahar |
Other Titles: | Not Available |
Authors: | Jeevalatha, A., Siddappa, S., Kumar, R., Tiwari, R.K., Lal, M.K., Sharma, S., Chakrabarti, S.K. and Singh, B.P |
ICAR Data Use Licennce: | http://krishi.icar.gov.in/PDF/ICAR_Data_Use_Licence.pdf |
Author's Affiliated institute: | ICAR :: Indian Institute of Spices Research |
Published/ Complete Date: | 2023-06-01 |
Project Code: | Not Available |
Keywords: | Kufri Bahar, Potato, RNA-seq Kufri Pukhraj ToLCNDV |
Publisher: | Not Available |
Citation: | Jeevalatha, A., Siddappa, S., Kumar, R., Tiwari, R.K., Lal, M.K., Sharma, S., Chakrabarti, S.K. and Singh, B.P., 2023. RNA-seq analysis reveals an early defense response to tomato leaf curl New Delhi virus in potato cultivar Kufri Bahar. Functional & Integrative Genomics, 23(3), 215 |
Series/Report no.: | Not Available; |
Abstract/Description: | Potatoes in India are very susceptible to apical leaf curl disease, which causes severe symptoms and greater yield losses. Because the majority of potato cultivars are susceptible to the virus, it is crucial to discover sources of resistance and investigate the mechanism of resistance/susceptibility in potato cultivars. In this study, the gene expression profile of two potato cultivars, Kufri Bahar (resistant) and Kufri Pukhraj (susceptible), varying in their level of resistance to ToLCNDV, was analyzed using RNA-Seq. The Ion ProtonTM system was used to sequence eight RiboMinus RNA libraries from inoculated and uninoculated potato plants at 15 and 20 days after inoculation (DAI). The findings indicated that the majority of differentially expressed genes (DEGs) were cultivar-or time-specific. These DEGs included genes for proteins that interact with viruses, genes linked with the cell cycle, genes for proteins involved in defense, transcription and translation initiation factors, and plant hormone signaling pathway genes. Interestingly, defense responses were generated early in Kufri Bahar, at 15 DAI, which may have impeded the replication and spread of ToLCNDV. This research provides a genome-wide transcriptional analysis of two potato cultivars with variable levels of ToLCNDV resistance. At an early stage, we observed suppression of genes that interact with viral proteins, induction of genes associated with restriction of cell division, genes encoding defense proteins, AP2/ERF transcription factors, and altered expression of zinc finger protein genes, HSPs, JA, and SA pathway-related genes. Our findings add to a greater comprehension of the molecular basis of potato resistance to ToLCNDV and may aid in the development of more effective disease management techniques. |
Description: | Not Available |
ISSN: | Not Available |
Type(s) of content: | Article |
Sponsors: | Not Available |
Language: | English |
Name of Journal: | Functional & Integrative Genomics |
Journal Type: | Not Available |
NAAS Rating: | Not Available |
Impact Factor: | Not Available |
Volume No.: | 23(3) |
Page Number: | 215 |
Name of the Division/Regional Station: | Not Available |
Source, DOI or any other URL: | Not Available |
URI: | http://krishi.icar.gov.in/jspui/handle/123456789/82736 |
Appears in Collections: | HS-IISR-Publication |
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