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SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs

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Title SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
 
Creator CHAKRABARTI, S
ANAND, AP
BHARDWAJ, N
PUGALENTHI, G
SOWDHAMINI, R
 
Subject protein data-bank
database
superfamilies
generation
patterns
blast
tool
 
Description Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via http:// www.ncbs.res.in/similar to faculty/mini/scanmot/scanmot.html.
 
Publisher OXFORD UNIV PRESS
 
Date 2011-08-22T06:57:20Z
2011-12-26T12:56:14Z
2011-12-27T05:44:38Z
2011-08-22T06:57:20Z
2011-12-26T12:56:14Z
2011-12-27T05:44:38Z
2005
 
Type Article
 
Identifier NUCLEIC ACIDS RESEARCH, 33(), W274-W276
0305-1048
http://dx.doi.org/10.1093/nar/gki493
http://dspace.library.iitb.ac.in/xmlui/handle/10054/10353
http://hdl.handle.net/10054/10353
 
Language en