ICAR Research Data Repository for Knowledge Management
The B73 Maize Genome: Complexity, Diversity, and Dynamics
DSpace at IIT Bombay
View Archive Info| Field | Value | |
| Title |
The B73 Maize Genome: Complexity, Diversity, and Dynamics
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| Creator |
SCHNABLE, PS
WARE, D FULTON, RS STEIN, JC WEI, FS PASTERNAK, S LIANG, CZ ZHANG, JW FULTON, L GRAVES, TA MINX, P REILY, AD COURTNEY, L KRUCHOWSKI, SS TOMLINSON, C STRONG, C DELEHAUNTY, K FRONICK, C COURTNEY, B ROCK, SM BELTER, E DU, FY KIM, K ABBOTT, RM COTTON, M LEVY, A MARCHETTO, P OCHOA, K JACKSON, SM GILLAM, B CHEN, WZ YAN, L HIGGINBOTHAM, J CARDENAS, M WALIGORSKI, J APPLEBAUM, E PHELPS, L FALCONE, J KANCHI, K THANE, T SCIMONE, A THANE, N HENKE, J WANG, T RUPPERT, J SHAH, N ROTTER, K HODGES, J INGENTHRON, E CORDES, M KOHLBERG, S SGRO, J DELGADO, B MEAD, K CHINWALLA, A LEONARD, S CROUSE, K COLLURA, K KUDRNA, D CURRIE, J HE, RF ANGELOVA, A RAJASEKAR, S MUELLER, T LOMELI, R SCARA, G KO, A DELANEY, K WISSOTSKI, M LOPEZ, G CAMPOS, D BRAIDOTTI, M ASHLEY, E GOLSER, W KIM, H LEE, S LIN, JK DUJMIC, Z KIM, W TALAG, J ZUCCOLO, A FAN, C SEBASTIAN, A KRAMER, M SPIEGEL, L NASCIMENTO, L ZUTAVERN, T MILLER, B AMBROISE, C MULLER, S SPOONER, W NARECHANIA, A REN, LY WEI, S KUMARI, S FAGA, B LEVY, MJ MCMAHAN, L VAN BUREN, P VAUGHN, MW YING, K YEH, CT EMRICH, SJ JIA, Y KALYANARAMAN, A HSIA, AP BARBAZUK, WB BAUCOM, RS BRUTNELL, TP CARPITA, NC CHAPARRO, C CHIA, JM DERAGON, JM ESTILL, JC FU, Y JEDDELOH, JA HAN, YJ LEE, H LI, PH LISCH, DR LIU, SZ LIU, ZJ NAGEL, DH MCCANN, MC SANMIGUEL, P MYERS, AM NETTLETON, D NGUYEN, J PENNING, BW PONNALA, L SCHNEIDER, KL SCHWARTZ, DC SHARMA, A SODERLUND, C SPRINGER, NM SUN, Q WANG, H WATERMAN, M WESTERMAN, R WOLFGRUBER, TK YANG, LX YU, Y ZHANG, LF ZHOU, SG ZHU, Q BENNETZEN, JL DAWE, RK JIANG, JM JIANG, N PRESTING, GG WESSLER, SR ALURU, S MARTIENSSEN, RA CLIFTON, SW MCCOMBIE, WR WING, RA WILSON, RK |
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| Subject |
transposable elements
arabidopsis-thaliana zea-mays genes plant retrotransposons methylation divergence evolution genetics |
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| Description |
We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an important crop plant and model for biological research. Over 32,000 genes were predicted, of which 99.8% were placed on reference chromosomes. Nearly 85% of the genome is composed of hundreds of families of transposable elements, dispersed nonuniformly across the genome. These were responsible for the capture and amplification of numerous gene fragments and affect the composition, sizes, and positions of centromeres. We also report on the correlation of methylation-poor regions with Mu transposon insertions and recombination, and copy number variants with insertions and/or deletions, as well as how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state. These analyses inform and set the stage for further investigations to improve our understanding of the domestication and agricultural improvements of maize.
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| Publisher |
AMER ASSOC ADVANCEMENT SCIENCE
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| Date |
2011-11-07T16:27:33Z
2011-12-26T13:01:28Z 2011-12-27T05:44:58Z 2011-11-07T16:27:33Z 2011-12-26T13:01:28Z 2011-12-27T05:44:58Z 2009 |
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| Type |
Article
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| Identifier |
SCIENCE, 326(5956), 1112-1115
0036-8075 http://dx.doi.org/10.1126/science.1178534 http://dspace.library.iitb.ac.in/xmlui/handle/10054/16593 http://hdl.handle.net/10054/16593 |
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| Language |
en
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