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FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets

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Title FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets
 
Creator Bonthala, Venkata Suresh
Muthamilarasan, Mehanathan
Roy, Riti
Prasad, Manoj
 
Subject Foxtail millet (Setaria italica)
Transcription factors
Bioenergy grasses
Gene ontology
Phylogeny
Physical map
Millets
 
Description Accepted date: 27 June 2014
Foxtail millet has recently been regarded as a model crop for studying the systems biology of millets and bioenergy grass species. For expediting the functional genomic studies in this model crop as well as in the related millets and bioenergy grasses, we have developed a comprehensive transcription factor database. Our foxtail millet transcription factors database (FmTFDb: http://59.163.192.91/FmTFDb/index.html ) encompasses 2,297 putative TFs in 55 families along with its sequence features, chromosomal locations, tissue-specific gene expression data, gene ontology (GO) assignment, and phylogeny. FmTFDb is intended to provide the users an unrestricted public access in retrieving and visualizing the individual members of a TF family through a set of query interfaces and analysis tools, including the BLAST search, annotation query interfaces, and tools to identify enriched GO terms and to visualize physical maps. This FmTFDb will serve as a promising central resource for researchers as well as breeders who are dedicated towards crop improvement of millets and bioenergy grasses.
Authors’ work in this area was financially
supported by the core Grant of National Institute of Plant Genome
Research (NIPGR), New Delhi, India. Mr. Mehanathan Muthamilarasan acknowledges the award of Junior Research Fellowship from
University Grants Commission, New Delhi. Assistance of Dr. Debasis
Chattopadhyay, NIPGR in providing server facility is greatly appreciated. Computational resources under BTISNET Program (DISC
facility) are thankfully acknowledged.
 
Date 2015-12-11T09:31:54Z
2015-12-11T09:31:54Z
2014
 
Type Article
 
Identifier Mol. Biol. Rep., 41(10): 6343-6348
1573-4978
http://172.16.0.77:8080/jspui/handle/123456789/398
http://link.springer.com/article/10.1007%2Fs11033-014-3574-y
10.1007/s11033-014-3574-y
 
Language en_US
 
Publisher Springer