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RNA-seq analysis identifies key genes involved in chickpea (Cicer arietinum L.) shoot development

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Title RNA-seq analysis identifies key genes involved in chickpea (Cicer arietinum L.) shoot development
 
Creator Biswas, S
Aggarwal, PR
Tayal, R
Sarkar, MP
Chakraborty, Niranjan
Chakraborty, Subhra
 
Subject Chickpea
transcriptome
RNA-seq
shoot development
 
Description Accepted date: 14th May 2016
Understanding the mechanism of plant development is particularly important for studying the regulatory genes and their specific functions. Here, we used paired end RNA sequencing to understand the complexity of legume shoot development in a non-model crop chickpea (Cicer arietinum L.). A total of 149.5 million paired end reads were obtained from two developmental stages of chickpea shoot. Differential gene expression analysis revealed the enrichment of transcripts associated with shoot development. Validation of few genes showed the reproducibility of our RNA-seq data. Collectively, the present study will not only help to generate a comprehensive organ specific transcriptome map but will also serve as a resource for gene discovery and future crop improvement program.
This work was supported by grants from National Institute of Plant Genome Research, New Delhi, India and Department of Biotechnology, GOI (No.BT/PR8472/AGR/02/389/2006) to S.C. P.R.A. is the recipient of pre-doctoral fellowship from the Council of Scientific and Industrial Research (CSIR), Govt. of India.
 
Date 2017-05-03T04:52:43Z
2017-05-03T04:52:43Z
2016
 
Type Article
 
Identifier Journal of Botanical Society of Bengal, 70(1): 49-54
0971-2976
http://59.163.192.83:8080/jspui/handle/123456789/737
http://www.connectjournals.com/subscription_info.php?bookmark=CJ-000258
 
Language en_US
 
Publisher Botanical Society of Bengal