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Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207).

DIR@IMTECH: CSIR-Institute of Microbial Technology

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Title Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207).
 
Creator Labutti, Kurt
Mayilraj, Shanmugam
Clum, Alicia
Lucas, Susan
Glavina Del Rio, Tijana
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Goodwin, Lynne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D
Rohde, Manfred
Spring, Stefan
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C
Klenk, Hans-Peter
Lapidus, Alla
 
Subject QH426 Genetics
 
Description Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fatty acids. It was isolated from an offshore oil well where it was been reported to be involved in pitting corrosion of mild steel. Initially, this bacterium was described as a distant relative of the genus Thermoanaerobacter, but was not assigned to a genus, it was subsequently placed into the novel phylum Synergistetes. A large number of repeats in the genome sequence prevented an economically justifiable closure of the last gaps. This is only the third published genome from a member of the phylum Synergistetes. The 2,576,359 bp long genome consists of three contigs with 2,458 protein-coding and 59 RNA genes and is part of the Genomic Encyclopedia of Bacteria and Archaea project.
 
Publisher Genomic Standards Consortium
 
Date 2010
 
Type Article
PeerReviewed
 
Format application/pdf
 
Identifier http://crdd.osdd.net/open/1111/1/mayilraj2010.2.pdf
Labutti, Kurt and Mayilraj, Shanmugam and Clum, Alicia and Lucas, Susan and Glavina Del Rio, Tijana and Nolan, Matt and Tice, Hope and Cheng, Jan-Fang and Pitluck, Sam and Liolios, Konstantinos and Ivanova, Natalia and Mavromatis, Konstantinos and Mikhailova, Natalia and Pati, Amrita and Goodwin, Lynne and Chen, Amy and Palaniappan, Krishna and Land, Miriam and Hauser, Loren and Chang, Yun-Juan and Jeffries, Cynthia D and Rohde, Manfred and Spring, Stefan and Göker, Markus and Woyke, Tanja and Bristow, James and Eisen, Jonathan A and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C and Klenk, Hans-Peter and Lapidus, Alla (2010) Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Standards in genomic sciences, 3 (1). pp. 85-92. ISSN 1944-3277
 
Relation http://www.standardsingenomics.org/index.php/sigen/article/view/sigs.1092865
http://crdd.osdd.net/open/1111/