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AVCpred: an integrated web server for prediction and design of antiviral compounds.

DIR@IMTECH: CSIR-Institute of Microbial Technology

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Title AVCpred: an integrated web server for prediction and design of antiviral compounds.
 
Creator Qureshi, Abid
Kaur, Gazaldeep
Kumar, Manoj
 
Subject QR Microbiology
 
Description Viral infections constantly jeopardize the global public health due to lack of effective antiviral therapeutics. Therefore, there is an imperative need to speed up the drug discovery process to identify novel and efficient drug candidates. In this study, we have developed quantitative structure-activity relationship (QSAR)-based models for predicting antiviral compounds (AVCs) against deadly viruses like human immunodeficiency virus (HIV), hepatitis C virus (HCV), hepatitis B virus (HBV), human herpesvirus (HHV) and 26 others using publicly available experimental data from the ChEMBL bioactivity database. Support vector machine (SVM) models achieved a maximum Pearson correlation coefficient of 0.72, 0.74, 0.66, 0.68, and 0.71 in regression mode and a maximum Matthew's correlation coefficient 0.91, 0.93, 0.70, 0.89, and 0.71, respectively, in classification mode during 10-fold cross-validation. Furthermore, similar performance was observed on the independent validation sets. We have integrated these models in the AVCpred web server, freely available at http://crdd.osdd.net/servers/avcpred. In addition, the datasets are provided in a searchable format. We hope this web server will assist researchers in the identification of potential antiviral agents. It would also save time and cost by prioritizing new drugs against viruses before their synthesis and experimental testing.
 
Publisher Wiley
 
Date 2016-08-04
 
Type Article
PeerReviewed
 
Format application/pdf
 
Identifier http://crdd.osdd.net/open/1898/1/68.pdf
Qureshi, Abid and Kaur, Gazaldeep and Kumar, Manoj (2016) AVCpred: an integrated web server for prediction and design of antiviral compounds. Chemical biology & drug design. ISSN 1747-0285
 
Relation http://onlinelibrary.wiley.com/doi/10.1111/cbdd.12834/abstract
http://crdd.osdd.net/open/1898/