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NGSEP (Next Generation Sequencing Eclipse Plugin)

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Title NGSEP (Next Generation Sequencing Eclipse Plugin)
 
Creator Cruz, Daniel Felipe
Hoz, Juan Fernando de la
Perea, Claudia Samantha
Quintero, Juan Camilo
Duitama, Jorge
 
Subject CÓDIGO GENÉTICO
GENETIC CODE
BIOLOGÍA COMPUTACIONAL
BIOINFORMATICS
GENOTYPES
GENOTIPOS
 
Description NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bowtie2 to perform mapping to the reference genome and other utilities such as alignments sorting, merging of variants from different samples, and functional annotation of variants. NGSEP is based on Eclipse which is one of the leading development environments for Java. Note: Since we offer different distribution alternatives for different kinds of users, the quick download (green) button may not lead you to the version of the product that you need. Please visit the web page to choose the distribution of NGSEP that better suits your data analysis environment.
 
Date 2015-09-29T15:20:38Z
2015-09-29T15:20:38Z
2014
 
Type Software
 
Identifier Cruz, Daniel Felipe; De la Hoz, Juan Fernando; Perea, Claudia Samantha; Quintero, Juan Camilo; Duitama, Jorge. 2014. NGSEP (Next Generation Sequencing Eclipse Plugin). Software download (Available online at http://sourceforge.net/p/ngsep/wiki/Home/).
https://hdl.handle.net/10568/68332
 
Language en