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Replication Data for: Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

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Title Replication Data for: Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
 
Identifier https://hdl.handle.net/11529/10548200
 
Creator Gardiner, Laura-Jayne
Brabbs, Thomas
Akhunov, Alina
Jordan, Katherine
Budak, Hikmet
Richmond, Todd
Singh, Sukhwinder
Catchpole, Leah
Akhunov, Eduard
Hall, Anthony
 
Publisher CIMMYT Research Data & Software Repository Network
 
Description This dataset contains supplemental files related to the GigaScience journal article 'Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat' (Volume 8, Issue 4, April 2019) with DOI: 10.1093/gigascience/giz018.
 
Subject Agricultural Sciences
Wheat
Plant genomes
Gene capture
Promoter capture
 
Language English
 
Date 2019-01-31
 
Contributor Rivera, Carolina
 
Relation The sequencing data sets are available in the European Nucleotide Archive repository,
study accession number PRJEB27620 and sample accession numbers
SAMEA4777554-577 https://www.ebi.ac.uk/ena/data/view/PRJEB27620


The final design space for the capture probes sets and the locations of the capture probes on this design space are available from the Grassroots Data Repository at https://opendata.earlham.ac.uk/wheat/under_license/toronto/Gardiner_2018-07-04_Wheat-gene-promoter-capture/


The target locations of the capture probe sets on the Chinese Spring IWGSC RefSeqv1, i.e., the high-confidence gene and putative promoter sequences, are detailed in supporting files. To download these files please go to 'Files' tab in this study.


The NimbleGen order numbers for the probe sets are as follows: Gene Capture 4 000 026 820; Promoter Capture v1, 4 000 030 160; and Promoter Capture v2, 4 000 032 530. All data are also available from the GigaScience GigaDB repository at http://gigadb.org/dataset/100554
 
Type Genotypic data