Replication Data for: Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
CIMMYT Research Data & Software Repository Network Dataverse OAI Archive
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Title |
Replication Data for: Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
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Identifier |
https://hdl.handle.net/11529/10548200
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Creator |
Gardiner, Laura-Jayne
Brabbs, Thomas Akhunov, Alina Jordan, Katherine Budak, Hikmet Richmond, Todd Singh, Sukhwinder Catchpole, Leah Akhunov, Eduard Hall, Anthony |
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Publisher |
CIMMYT Research Data & Software Repository Network
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Description |
This dataset contains supplemental files related to the GigaScience journal article 'Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat' (Volume 8, Issue 4, April 2019) with DOI: 10.1093/gigascience/giz018.
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Subject |
Agricultural Sciences
Wheat Plant genomes Gene capture Promoter capture |
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Language |
English
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Date |
2019-01-31
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Contributor |
Rivera, Carolina
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Relation |
The sequencing data sets are available in the European Nucleotide Archive repository, study accession number PRJEB27620 and sample accession numbers SAMEA4777554-577 https://www.ebi.ac.uk/ena/data/view/PRJEB27620 The final design space for the capture probes sets and the locations of the capture probes on this design space are available from the Grassroots Data Repository at https://opendata.earlham.ac.uk/wheat/under_license/toronto/Gardiner_2018-07-04_Wheat-gene-promoter-capture/ The target locations of the capture probe sets on the Chinese Spring IWGSC RefSeqv1, i.e., the high-confidence gene and putative promoter sequences, are detailed in supporting files. To download these files please go to 'Files' tab in this study. The NimbleGen order numbers for the probe sets are as follows: Gene Capture 4 000 026 820; Promoter Capture v1, 4 000 030 160; and Promoter Capture v2, 4 000 032 530. All data are also available from the GigaScience GigaDB repository at http://gigadb.org/dataset/100554 |
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Type |
Genotypic data
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