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Sphingomonas pokkalii sp. nov., a novel plant associated rhizobacterium isolated from a saline tolerant pokkali rice and its draft genome analysis.

DIR@IMTECH: CSIR-Institute of Microbial Technology

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Title Sphingomonas pokkalii sp. nov., a novel plant associated rhizobacterium isolated from a saline tolerant pokkali rice and its draft genome analysis.
 
Creator Menon, Rahul R
Kumari, Sunitha
Kumar, Pravin
Verma, Ashish
Krishnamurthi, Srinivasan
Rameshkumar, N.
 
Subject QR Microbiology
 
Description Three strains L3B27(T), 3CNBAF, L1A4 isolated from a brackish cultivated pokkali rice rhizosphere were characterised using a polyphasic taxonomic approach. Phylogenetic analysis based on 16S rRNA and recA gene sequences revealed that these strains were highly similar among each other and formed a separate monophyletic cluster within the genus Sphingomonas with Sphingomonas pituitosa DSM 13101(T), Sphingomonas azotifigens DSM 18530(T) and Sphingomonas trueperi DSM 7225(T) as their closest relatives sharing 97.9-98.3% 16S rRNA similarity and 91.3-94.0% recA similarity values, respectively. The average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridisation (dDDH) values between L3B27(T) (representative of the novel strains) and its phylogenetically closest Sphingomonas species were well below the established cut-off
 
Publisher Elsevier Science
 
Date 2019-05-18
 
Type Article
PeerReviewed
 
Relation https://www.sciencedirect.com/science/article/pii/S072320201830448X?via%3Dihub
http://crdd.osdd.net/open/2645/
 
Identifier Menon, Rahul R and Kumari, Sunitha and Kumar, Pravin and Verma, Ashish and Krishnamurthi, Srinivasan and Rameshkumar, N. (2019) Sphingomonas pokkalii sp. nov., a novel plant associated rhizobacterium isolated from a saline tolerant pokkali rice and its draft genome analysis. Systematic and applied microbiology, 42 (3). pp. 334-342. ISSN 1618-0984