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Data on genetic dissection and QTL mapping of fodder quality traits in Sorghum under different water regimes

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Title Data on genetic dissection and QTL mapping of fodder quality traits in Sorghum under different water regimes
 
Identifier https://doi.org/10.21421/D2/3UKRCK
 
Creator Somegowda K Vinutha
Vemula Anilkumar
Naravula Jalaja
Rathore Abhishek
Jones Chris
Deshpande P Santosh
 
Publisher ICRISAT Dataverse
 
Description Data on QTL analysis and identification of genomic regions or loci associated with fodder quality traits in sorghum. The genotypes along with parents were sown and DNA was isolated from leaves of each accession at 4 to 6 leaf stage using the modified Hexadecyltrimethylammonium bromide (CTAB) protocol from 12-day-old seedlings and genotyping done following the GBS (genotyping by sequencing) approach with ApeKI restriction enzyme used for complexity reduction. SNPs were called using TASSEL v5.2 GBS pipeline against sorghum assembly v3.1 with default parameters. The raw SNP data has 321 taxa (including population and two parents) with 292960 numbers of sites. The SNP calling was done at 90% coverage based on sites, >10% missing values, and minor allele frequencies
 
Subject Agricultural Sciences
Sorghum
QTL
SNP
 
Language English
 
Contributor Deshpande, Santosh
 
Type Genotype