Record Details

The draft genome of Corchorus olitorius cv. JRO-524 (Navin)

KRISHI: Publication and Data Inventory Repository

View Archive Info
 
 
Field Value
 
Title The draft genome of Corchorus olitorius cv. JRO-524 (Navin)
Not Available
 
Creator D. Sarkar
A. Mahato
P. Satya
A. Kundu
S. Singh
P. K. Jayaswal
A. Singh
K. Bahadur
S. Pattnaik
N. Singh
A. Chakraborty
N. A. Mandal
D. Das
T. Basu
A. M. Sevanthi
D. Saha
S. Datta
C. S. Kar
J. Mitra
K. Datta
P. G. Karmakar
T. R. Sharma
T. Mohapatra
N. K. Singh
 
Subject Bast fibre
Corchorus olitorius
Dark jute
Illumina MiSeq
Whole genome sequence
 
Description Not Available
Here, we present the draft genome (377.3 Mbp) of Corchorus olitorious cv. JRO-524 (Navin), which is a leading
dark jute variety developed from a cross between African (cv. Sudan Green) and indigenous (cv. JRO-632) types.
We predicted from the draft genome a total of 57,087 protein-coding genes with annotated functions. We
identified a large number of 1765 disease resistance-like and defense response genes in the jute genome. The
annotated genes showed the highest sequence similarities with that of Theobroma cacao followed by Gossypium raimondii. Seven chromosome-scale genetically anchored pseudomolecules were constructed with a total size of 8.53 Mbp and used for synteny analyses with the cocoa and cotton genomes. Like other plant species, gypsy and copia retrotransposons were the most abundant classes of repeat elements in jute. The raw data of our study are available in SRA database of NCBI with accession number SRX1506532. The genome sequence has been deposited at DDBJ/EMBL/GenBank under the accession LLWS00000000, and the version described in this paper will be the first version (LLWS01000000).
Not Available
 
Date 2018-11-20T20:17:00Z
2018-11-20T20:17:00Z
2017-06-01
 
Type Research Paper
 
Identifier 3
2213-5960
http://krishi.icar.gov.in/jspui/handle/123456789/12370
 
Language English
 
Relation Not Available;
 
Publisher Elsevier