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Complete genome sequencing of Piper yellow mottle virus infecting black pepper, betelvine and Indian long pepper

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Title Complete genome sequencing of Piper yellow mottle virus infecting black pepper, betelvine and Indian long pepper
Not Available
 
Creator Deeshma, K.P. and Bhat, A.I.
 
Subject Full genome sequence
Sequence analysis
Phylogeny
Badnavirus
Open reading frame
 
Description Not Available
The complete genome of the Piper yellow
mottle virus (PYMoV), a Badnavirus belonging to the
family Caulimoviridae, was sequenced from three naturally
infected hosts namely, black pepper, betelvine, and Indian
long pepper. The genome length of the three virus strains
(one from each of the three host species) varied from 7,559
to 7,584 nucleotides, and all the three strains possessed
four open reading frames (ORFs) I to IV that potentially
encode proteins of 15.67, 17.08, 218.6, and 17.22 kDa,
respectively. ORF III encodes a polyprotein consisting of
viral movement protein, trimeric dUTPase, zinc finger,
aspartic protease, reverse transcriptase, and RNase H
whereas ORF I, II, and IV encode proteins of unknown
functions. The complete genome sequences at the nucleotide
level were 89–99 % identical with one available
sequence of PYMoV and 39–56 % identical with other
badnaviruses, indicating that all three are strains of PYMoV.
Nucleotide and amino acid sequences of ORF I–IV
and of the intergenic region (IR) were 80–100 % identical
among PYMoV strains. Phylogenetic analysis of ORF III
amino acid sequences showed the PYMoV strains forming
a distinct cluster well separated from other badnaviruses.
Among other badnaviruses, Fig badnavirus 1 (FBV-1) was
the one most closely related to PYMoV.
Not Available
 
Date 2019-11-30T11:22:14Z
2019-11-30T11:22:14Z
2014-10-21
 
Type Research Paper
 
Identifier Deeshma, K.P. and Bhat, A.I. 2015. Complete genome sequencing of Piper yellow mottle virus infecting black pepper, betelvine and Indian long pepper. Virus Genes 50: 172-175
DOI 10.1007/s11262-014-1134-0
http://krishi.icar.gov.in/jspui/handle/123456789/26055
 
Language English
 
Relation Not Available;
 
Publisher Springer