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miRNAs in brinjal (Solanum melongena) mined through an in silico approach

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Title miRNAs in brinjal (Solanum melongena) mined through an in silico approach
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Creator DC Lakshmana Reddy, V Radhika, A Bharadwaj, KS Khandagale, C Aswath
 
Subject Bioinformatics, miRNA mining, brinjal
 
Description Not Available
Plant micro-RNAs (miRNAs) are conserved and play important roles in abiotic stress responses or in plant responses to pathogen attack. Six miRNAs were identified in Solanum melongena (brinjal, eggplant) using bioinformatic methods from 98,089 EST sequences. Sixty-one potential mRNA targets were identified by homology searches of all six identified miRNAs against the Arabidopsis mRNA dataset using on-line miRU software (http://www.mirbase.org). The newly-identified miRNAs were studied further to compare their level of conservation with respect other family members. Later, the core promoter found in all targeted genes was identified and a highly-conserved GNAA motif with a critical role in the biogenesis of miRNAs was identified. The findings from this study will be useful for further research on the features of miRNAs and their mechanisms of gene regulation in S. melongena.
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Date 2019-05-28T05:56:10Z
2019-05-28T05:56:10Z
2012-01-01
 
Type Research Paper
 
Identifier Not Available
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http://krishi.icar.gov.in/jspui/handle/123456789/19935
 
Language English
 
Relation Not Available;
 
Publisher Not Available