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Duck gut viral metagenome analysis captures snapshot of viral diversity.

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Title Duck gut viral metagenome analysis captures snapshot of viral diversity.
Not Available
 
Creator Fawaz M.
Vijayakumar P.
Mishra A.
Gandhale P.N.
Dutta R.
Kamble N.M.
Sudhakar S.B.
Roychoudhary P.
Kumar H.
Kulkarni D.D.
Raut A.A.
 
Subject Duck
Virome
Viral metagenomics
Gut
Papillomaviridae
Next generation sequencing
 
Description Not Available
Background-

Ducks (Anas platyrhynchos) an economically important waterfowl for meat, eggs and feathers; is also a natural reservoir for influenza A viruses. The emergence of novel viruses is attributed to the status of co-existence of multiple types and subtypes of viruses in the reservoir hosts. For effective prediction of future viral epidemic or pandemic an in-depth understanding of the virome status in the key reservoir species is highly essential.

Methods-

To obtain an unbiased measure of viral diversity in the enteric tract of ducks by viral metagenomic approach, we deep sequenced the viral nucleic acid extracted from cloacal swabs collected from the flock of 23 ducks which shared the water bodies with wild migratory birds.

Result-

In total 7,455,180 reads with average length of 146 bases were generated of which 7,354,300 reads were de novo assembled into 24,945 contigs with an average length of 220 bases and the remaining 100,880 reads were singletons. The duck virome were identified by sequence similarity comparisons of contigs and singletons (BLASTx E score,
Not Available
 
Date 2018-03-22T07:54:04Z
2018-03-22T07:54:04Z
2016-06-01
 
Type Research Paper
 
Identifier Fawaz M, Vijayakumar P, Mishra A, Gandhale PN, Dutta R, Kamble NM, Sudhakar SB, Roychoudhary P, Kumar H, Kulkarni DD, Raut AA. Duck gut viral metagenome analysis captures snapshot of viral diversity. Gut Pathog. Gut Pathog. 2016 Jun 9;8:30.
17574749
http://krishi.icar.gov.in/jspui/handle/123456789/6014
 
Language English
 
Relation Not Available;
 
Publisher BioMed Central