Duck gut viral metagenome analysis captures snapshot of viral diversity.
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Title |
Duck gut viral metagenome analysis captures snapshot of viral diversity.
Not Available |
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Creator |
Fawaz M.
Vijayakumar P. Mishra A. Gandhale P.N. Dutta R. Kamble N.M. Sudhakar S.B. Roychoudhary P. Kumar H. Kulkarni D.D. Raut A.A. |
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Subject |
Duck
Virome Viral metagenomics Gut Papillomaviridae Next generation sequencing |
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Description |
Not Available
Background- Ducks (Anas platyrhynchos) an economically important waterfowl for meat, eggs and feathers; is also a natural reservoir for influenza A viruses. The emergence of novel viruses is attributed to the status of co-existence of multiple types and subtypes of viruses in the reservoir hosts. For effective prediction of future viral epidemic or pandemic an in-depth understanding of the virome status in the key reservoir species is highly essential. Methods- To obtain an unbiased measure of viral diversity in the enteric tract of ducks by viral metagenomic approach, we deep sequenced the viral nucleic acid extracted from cloacal swabs collected from the flock of 23 ducks which shared the water bodies with wild migratory birds. Result- In total 7,455,180 reads with average length of 146 bases were generated of which 7,354,300 reads were de novo assembled into 24,945 contigs with an average length of 220 bases and the remaining 100,880 reads were singletons. The duck virome were identified by sequence similarity comparisons of contigs and singletons (BLASTx E score, Not Available |
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Date |
2018-03-22T07:54:04Z
2018-03-22T07:54:04Z 2016-06-01 |
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Type |
Research Paper
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Identifier |
Fawaz M, Vijayakumar P, Mishra A, Gandhale PN, Dutta R, Kamble NM, Sudhakar SB, Roychoudhary P, Kumar H, Kulkarni DD, Raut AA. Duck gut viral metagenome analysis captures snapshot of viral diversity. Gut Pathog. Gut Pathog. 2016 Jun 9;8:30.
17574749 http://krishi.icar.gov.in/jspui/handle/123456789/6014 |
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Language |
English
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Relation |
Not Available;
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Publisher |
BioMed Central
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