Development of reverse transcription loop-mediated isothermal amplification (RT-LAMP) and reverse transcription recombinase polymerase amplification (RT-RPA) assays for the detection of two novel viruses infecting ginger
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Title |
Development of reverse transcription loop-mediated isothermal amplification (RT-LAMP) and reverse transcription recombinase polymerase amplification (RT-RPA) assays for the detection of two novel viruses infecting ginger
Not Available |
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Creator |
K.P. Naveen
A. I. Bhat |
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Subject |
Chlorotic fleck disease; Detection; Sensitivity; Ginger; Novel virus; Ampelovirus; Tombusviridae; RT-LAMP; RT-RPA
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Description |
Not Available
Our recent studies have shown the association of two novel viruses namely, ginger chlorotic fleck-associated virus 1 (GCFaV-1) and ginger chlorotic fleck-associated virus 2 (GCFaV-2) with chlorotic fleck disease of ginger. As ginger is propagated through vegetative means, the development of diagnostics would aid in the identification of virus-free plants. In the present study, reverse transcription loop-mediated isothermal amplification (RT-LAMP) and reverse transcription recombinase polymerase amplification (RT-RPA) assays were developed and validated for the quick detection of GCFaV-1 and GCFaV-2. The detection limits of viruses by these assays, when compared with conventional and real-time RT-PCR, showed that RT-LAMP was up to 1000 times more sensitive than conventional RT-PCR and one-hundredth that of real-time RT-PCR for both the viruses. The detection limit of RT-RPA for GCFaV-1 was up to 100 times more than that of RT-PCR and one-thousandth that of real-time RT-PCR. On the other hand, for detecting GCFaV-2, RT-RPA was found up to 1000 times more sensitive than conventional RT-PCR and one hundredth that of real-time RT-PCR. Based on the cost-effectiveness and duration, RT-LAMP and RT-RPA assays can be suggested for the rapid detection of both viruses Not Available |
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Date |
2021-07-28T05:17:10Z
2021-07-28T05:17:10Z 2020-05-20 |
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Type |
Research Paper
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Identifier |
Naveen KP, Bhat AI, 2020. Development of reverse transcription loop-mediated isothermal amplification (RT-LAMP) and reverse transcription recombinase polymerase amplification (RT-RPA) assays for the detection of two novel viruses infecting ginger, Journal of Virological Methods. 282: 113884. https://doi.org/10.1016/j.jviromet.2020.113884
Not Available http://krishi.icar.gov.in/jspui/handle/123456789/50419 |
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Language |
English
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Relation |
Not Available;
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Publisher |
Elseveir
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