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Plant virus interaction mechanism and associated pathways in mosaic disease of small cardamom (Elettaria cardamomum Maton) by RNA-Seq approach

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Title Plant virus interaction mechanism and associated pathways in mosaic disease of small cardamom (Elettaria cardamomum Maton) by RNA-Seq approach
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Creator Aamir Khan, K. Johnson George, Rahul Singh Jasrotiaa, Sharon Aravind , U.B. Angadia, Mir Asif Iquebala , K.P. Manjub , Sarika Jaiswala , P. Umadevi , Anil Raia , Dinesh Kumar
 
Subject Small cardamom Transcriptome Molecular markers Genomic resources GRN
 
Description Not Available
Small cardamom (Elettaria cardamomum), grown in limited coastal tropical countries is one of the costliest and
widely exported agri-produce having global turnover of>10 billion USD. Mosaic/marble disease is one of the
major impediments that requires understanding of disease at molecular level. Neither whole genome sequence
nor any genomic resources are available, thus RNA seq approach can be a rapid and economical alternative. De
novo transcriptome assembly was done with Illumina Hiseq data. A total of 5317 DEGs, 2267 TFs, 114 pathways
and 175,952 genic region putative markers were obtained. Gene regulatory network analysis deciphered molecular
events involved in marble disease. This is the first transcriptomic report revealing disease mechanism
mediated by perturbation in auxin homeostasis and ethylene signalling leading to senescence. The web-genomic resource (SCMVTDb) catalogues putative molecular markers, candidate genes and transcript information.SCMVTDb can be used in germplasm improvement against mosaic disease in endeavour of small cardamom
productivity.
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Date 2021-07-28T08:14:17Z
2021-07-28T08:14:17Z
2019-11-23
 
Type Research Paper
 
Identifier Aamir Khan, K. Johnson George, Rahul Singh Jasrotiaa, Sharon Aravind , U.B. Angadia, Mir Asif Iquebala , K.P. Manjub , Sarika Jaiswala , P. Umadevi , Anil Raia , Dinesh Kumar. 2019. Plant virus interaction mechanism and associated pathways in mosaic disease of small cardamom (Elettaria cardamomum Maton) by RNA-Seq approach.Genomics. available online 23 Nov. 2019
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http://krishi.icar.gov.in/jspui/handle/123456789/50642
 
Language English
 
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Publisher Not Available