Record Details

FBIS: A regional DNA barcode archival & analysis system for Indian fishes

KRISHI: Publication and Data Inventory Repository

View Archive Info
 
 
Field Value
 
Title FBIS: A regional DNA barcode archival & analysis system for Indian fishes
Not Available
 
Creator Naresh Sahebrao Nagpure
Iliyas Rashid
Ajey Kumar Pathak
Mahender Singh
Shri Prakash Singh
Uttam Kumar Sarkar
 
Subject Genetic Divergence
Fish,
LAMP
Phylogeny
Phylogeography
Taxonomy
 
Description Not Available
DNA barcode is a new tool for taxon recognition and classification of biological organisms based on sequence of a fragment of mitochondrial gene, cytochrome c oxidase I (COI). In view of the growing importance of the fish DNA barcoding for species identification, molecular taxonomy and fish diversity conservation, we developed a Fish Barcode Information System (FBIS) for Indian fishes, which will serve as a regional DNA barcode archival and analysis system. The database presently contains 2334 sequence records of COI gene for 472 aquatic species belonging to 39 orders and 136 families, collected from available published data sources. Additionally, it contains information on phenotype, distribution and IUCN Red List status of fishes. The web version of FBIS was designed using MySQL, Perl and PHP under Linux operating platform to (a) store and manage the acquisition (b) analyze and explore DNA barcode records (c) identify species and estimate genetic divergence. FBIS has also been integrated with appropriate tools for retrieving and viewing information about the database statistics and taxonomy. It is expected that FBIS would be useful as a potent information system in fish molecular taxonomy, phylogeny and genomics.
National Agricultural Bioinformatics Grid (NABG), under National Agricultural Innovation Project (NAIP), ICAR, New Delhi
 
Date 2017-07-19T09:48:16Z
2017-07-19T09:48:16Z
2012-05-31
 
Type Research Paper
 
Identifier Nagpure NS, Rashid I, Pathak AK, Singh M, Singh SP, Sarkar UK. FBIS: A regional DNA barcode archival & analysis system for Indian fishes. Bioinformation. 2012;8(10):483-488. doi:10.6026/97320630008483.
Not Available
http://krishi.icar.gov.in/jspui/handle/123456789/4802
 
Language English
 
Relation Not Available;
 
Publisher Biomedical Informatics Publishing Group