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Data on solute carrier transporter genes of a threatened Himalayan fish species- Schizothorax richardsonii

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Title Data on solute carrier transporter genes of a threatened Himalayan fish species- Schizothorax richardsonii
Not Available
 
Creator Ashoktaru Barat
Prabhati Kumari Sahoo
Rohit Kumar
Chirag Goel
C. Siva
Shahnawaz Ali
 
Subject RNA-Seq, Molecular characterization, Cellular transporters
 
Description Not Available
The Snowtrout, Schizothorax richardsonii, is a vulnerable fish species found in different rivers and rivulets of the Himalayan region. The species is also a suitable poikilotherm to study the low temperature tolerance as it dwells well at a temperature range of 5-20 0C. The solute carrier (SLC) group of membrane transport proteins play an integral role in cellular acclimation response. The
present RNA sequencing was done to identify solute carrier transporter which are the major gene cascades responsible for transport of sugars, amino acids, oligonucleotides, ions, drugs, etc.
to and from the cell organelles. A reference transcriptome database
was created from liver tissue of Schizothorax richardsonii through
RNA sequencing on Illumina HiSeq 2000 platform. The sequences
were annotated and characterized under various solute carrier families in the species. So far, 113 transcripts were identified as solute carrier transporter genes categorized under 13 different families. This data will be useful for many researchers working on
gene cloning and differential expression of solute carriers.
Indian Council of Agricultural Research (ICAR)
 
Date 2020-09-28T10:28:22Z
2020-09-28T10:28:22Z
2019-01-01
 
Type Research Paper
 
Identifier Barat, A., Sahoo, P.K., Kumar, R., Goel, C.,Siva, C., Ali, S., 2019. Data on solute carrier transporter genes of a threatened Himalayan fish species- Schizothorax richardsonii. Data in Brief, 23:103712 https://doi.org/10.1016/j.dib.2019.103712.
2352-3409
http://krishi.icar.gov.in/jspui/handle/123456789/41661
 
Language English
 
Relation Not Available;
 
Publisher Elsevier