Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis)
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Title |
Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis)
Not Available |
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Creator |
Aamir Khan
Kalpana Singh Sarika Jaiswal Mustafa Raza Rahul Singh Jasrotia Animesh Kumar Anoop Kishor Singh Gurjar Juli Kumari Varij Nayan Mir Asif Iquebal U. B. Angadi Anil Rai Tirtha Kumar Datta Dinesh Kumar |
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Subject |
bovine
lncRNA miRNA molecular markers web-resource CircRNAs |
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Description |
Not Available
Water buffalo (Bubalus bubalis), belonging to the Bovidae family, is an economically important animal as it is the major source of milk, meat, and drought in numerous countries. It is mainly distributed in tropical and subtropical regions with a global population of approximately 202 million. The advent of low cost and rapid sequencing technologies has opened a new vista for global buffalo researchers. In this study, we utilized the genomic data of five commercially important buffalo breeds, distributed globally, namely, Mediterranean, Egyptian, Bangladesh, Jaffrarabadi, and Murrah. Since there is no whole-genome sequence analysis of these five distinct buffalo breeds, which represent a highly diverse ecosystem, we made an attempt for the same. We report the first comprehensive, holistic, and user-friendly web genomic resource of buffalo (BuffGR) accessible at http://backlin.cabgrid.res.in/buffgr/, that catalogues 6028881 SNPs and 613403 InDels extracted from a set of 31 buffalo tissues. We found a total of 7727122 SNPs and 634124 InDels distributed in four breeds of buffalo (Murrah, Bangladesh, Jaffarabadi, and Egyptian) with reference to the Mediterranean breed. It also houses 4504691 SSR markers from all the breeds along with 1458 unique circRNAs, 37712 lncRNAs, and 938 miRNAs. This comprehensive web resource can be widely used by buffalo researchers across the globe for use of markers in marker trait association, genetic diversity among the different breeds of buffalo, use of ncRNAs as regulatory molecules, post-transcriptional regulations, and role in various diseases/stresses. These SNPs and InDelscan also be used as biomarkers to address adulteration and traceability. This resource can also be useful in buffalo improvement programs and disease/breed management. Not Available |
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Date |
2022-04-11T09:46:35Z
2022-04-11T09:46:35Z 2022-04-11 |
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Type |
Research Paper
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Identifier |
Khan A, Singh K, Jaiswal S, Raza M, Jasrotia RS, Kumar A, Gurjar AKS, Kumari J, Nayan V, Iquebal MA, Angadi UB, Rai A, Datta TK and Kumar D (2022) Whole-Genome- Based Web Genomic Resource for Water Buffalo (Bubalus bubalis). Front. Genet. 13:809741. doi: 10.3389/fgene.2022.809741
Not Available http://krishi.icar.gov.in/jspui/handle/123456789/71442 |
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Language |
English
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Relation |
Not Available;
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Publisher |
Not Available
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