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Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis)

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Title Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis)
Not Available
 
Creator Aamir Khan
Kalpana Singh
Sarika Jaiswal
Mustafa Raza
Rahul Singh Jasrotia
Animesh Kumar
Anoop Kishor Singh Gurjar
Juli Kumari
Varij Nayan
Mir Asif Iquebal
U. B. Angadi
Anil Rai
Tirtha Kumar Datta
Dinesh Kumar
 
Subject bovine
lncRNA
miRNA
molecular markers
web-resource
CircRNAs
 
Description Not Available
Water buffalo (Bubalus bubalis), belonging to the Bovidae family, is an economically
important animal as it is the major source of milk, meat, and drought in numerous
countries. It is mainly distributed in tropical and subtropical regions with a global
population of approximately 202 million. The advent of low cost and rapid sequencing
technologies has opened a new vista for global buffalo researchers. In this study, we
utilized the genomic data of five commercially important buffalo breeds, distributed
globally, namely, Mediterranean, Egyptian, Bangladesh, Jaffrarabadi, and Murrah.
Since there is no whole-genome sequence analysis of these five distinct buffalo
breeds, which represent a highly diverse ecosystem, we made an attempt for the
same. We report the first comprehensive, holistic, and user-friendly web genomic
resource of buffalo (BuffGR) accessible at http://backlin.cabgrid.res.in/buffgr/, that
catalogues 6028881 SNPs and 613403 InDels extracted from a set of 31 buffalo
tissues. We found a total of 7727122 SNPs and 634124 InDels distributed in four
breeds of buffalo (Murrah, Bangladesh, Jaffarabadi, and Egyptian) with reference to the
Mediterranean breed. It also houses 4504691 SSR markers from all the breeds along with
1458 unique circRNAs, 37712 lncRNAs, and 938 miRNAs. This comprehensive web
resource can be widely used by buffalo researchers across the globe for use of markers in
marker trait association, genetic diversity among the different breeds of buffalo, use of
ncRNAs as regulatory molecules, post-transcriptional regulations, and role in various
diseases/stresses. These SNPs and InDelscan also be used as biomarkers to address
adulteration and traceability. This resource can also be useful in buffalo improvement
programs and disease/breed management.
Not Available
 
Date 2022-04-11T09:46:35Z
2022-04-11T09:46:35Z
2022-04-11
 
Type Research Paper
 
Identifier Khan A, Singh K, Jaiswal S, Raza M, Jasrotia RS, Kumar A, Gurjar AKS, Kumari J, Nayan V, Iquebal MA, Angadi UB, Rai A, Datta TK and Kumar D (2022) Whole-Genome- Based Web Genomic Resource for Water Buffalo (Bubalus bubalis). Front. Genet. 13:809741. doi: 10.3389/fgene.2022.809741
Not Available
http://krishi.icar.gov.in/jspui/handle/123456789/71442
 
Language English
 
Relation Not Available;
 
Publisher Not Available