Record Details

Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle.

KRISHI: Publication and Data Inventory Repository

View Archive Info
 
 
Field Value
 
Title Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle.
Not Available
 
Creator Prabina Kumar Meher
Tanmaya Kumar Sahu
A.R.Rao
S.D.Wahi
 
Subject Content sensors
DNA methylation
Coding region
Random forest
DCDNC
 
Description Not Available
Coding regions are the fragments of DNA sequence that codes for protein through the process of transcription and translation respectively. On the other hand, the non coding regions do not give rise to any protein. Discrimination of coding regions from the non coding regions is essential for genome annotation. In this study, an attempt has been made to develop a random forest based computational approach for discriminating coding regions (CDS) from non-coding regions (introns). The features based on codon structure and methylation mediated substitutions were used in this approach. The developed approach achieved high classification accuracy, while tested on two agriculturally important species i.e., rice and cattle. The proposed approach is believed to complement the other prediction methods. Based on the proposed approach, an online prediction server ‘DCDNC’ has also been developed for easy prediction by the users. The prediction server is freely available at http://cabgrid.res.in:8080/DCDNC.
Not Available
 
Date 2022-08-07T06:30:05Z
2022-08-07T06:30:05Z
2016-11-01
 
Type Research Paper
 
Identifier Prabina Kumar Meher, Tanmaya Kumar Sahu, A.R. Rao, S.D. Wahi, (2016). Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle, Computers and Electronics in Agriculture, 129, 66-73, https://doi.org/10.1016/j.compag.2016.09.013.
Not Available
http://krishi.icar.gov.in/jspui/handle/123456789/73733
 
Language English
 
Relation Not Available;
 
Publisher Not Available