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de novo transcriptomic profiling of differentially expressed genes in grass halophyte Urochondra setulosa under high salinity

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Title de novo transcriptomic profiling of differentially expressed genes in grass halophyte Urochondra setulosa under high salinity
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Creator Anita Mann, Naresh Kumar, Ashwani Kumar, Charu Lata, Arvind Kumar, Babu Lal Meena, Dwijesh Mishra, Monendra Grover, Sonam Gaba, C. Parameswaran & Nitin Mantri
 
Subject halophytes, salinity, transcriptomics
 
Description Not Available
Soil salinity is one of the major limiting factors for crop productivity across the world. Halophytes have recently been a source of attraction for exploring the survival and tolerance mechanisms at extreme saline conditions. Urochondra setulosa is one of the obligate grass halophyte that can survive in up to 1000 mM NaCl. The de novo transcriptome of Urochondra leaves at different salt concentrations of 300–500 mM NaCl was generated on Illumina HiSeq. Approximately 352.78 million high quality reads with an average contig length of 1259 bp were assembled de novo. A total of 120,231 unigenes were identified. On an average, 65% unigenes were functionally annotated to known proteins. Approximately 35% unigenes were specific to Urochondra. Differential expression revealed significant enrichment (P 
ICAR-NASF, New Delhi
 
Date 2021-07-30T11:34:02Z
2021-07-30T11:34:02Z
2021-03-10
 
Type Research Paper
 
Identifier Mann, A., Kumar, N., Kumar, A. et al. de novo transcriptomic profiling of differentially expressed genes in grass halophyte Urochondra setulosa under high salinity. Sci Rep 11, 5548 (2021). https://doi.org/10.1038/s41598-021-85220-7
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http://krishi.icar.gov.in/jspui/handle/123456789/51558
 
Language English
 
Relation Not Available;
 
Publisher www.nature.com/scientificreports