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Comparative analysis of genome browser for visualization of genetic variants.

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Title Comparative analysis of genome browser for visualization of genetic variants.
Not Available
 
Creator Vivek Kumar
Anu Sharma
SB Lal
K. K. Chaturvedi
Md. Samir Farooqi
DC Mishra
Lakshmi Sonkusale
Rajeev Kumar
 
Subject Genetic variants
SNPs
visualization
web
 
Description Not Available
Genetic variations are used to describe the variations present in the DNA sequence of an individual’s
genome. Single Nucleotide Polymorphisms (SNPs) is the commonly used genetic variant for comparative
genomics. Each SNP represents a difference in a single DNA base namely Adenine (A), Thymine (T),
Cytosine (C) or Guanine (G) in DNA. Similarly, there are many other genetic variants namely Simple
Sequence Repeat (SSR), Copy Number Variations (CNV), In Dels etc. At present, these genetic variants
have been identified using various methods. These identified genetic variants are scattered at different
locations in a genome and are also explored in isolation. A number of Genome browsers are used for the
visualization of these variants on web. Therefore, it is required to compare the features of these browsers
in order to select a best browser in a given situation. This paper describes the comparison of various features
of important genome browsers and a web based prototype developed for visualization of SNPs using
HTML, CSS, JavaScript, JSP and JBrowse. This tool will help users to access, addition of other genetic
variants and its associated information through a single window interface.
Not Available
 
Date 2022-04-19T06:48:26Z
2022-04-19T06:48:26Z
2022-02-23
 
Type Review Paper
 
Identifier Vivek Kumar, Anu Sharma, SB Lal, KK Chaturvedi, Md. Samir Farooqi, DC Mishra, Lakshmi Sonkusale and Rajeev Kumar (2022). Comparative analysis of genome browser for visualization of genetic variants, The Pharma Innovations, 11(3), 384-388.
Not Available
http://krishi.icar.gov.in/jspui/handle/123456789/71623
 
Language English
 
Relation Not Available;
 
Publisher Not Available