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A Web Tool for Consensus Gene Regulatory Network Construction.

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Title A Web Tool for Consensus Gene Regulatory Network Construction.
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Creator Sarkar Chiranjib
Rajender Parsad
Dwijesh Chandra Mishra
Anil Rai
 
Subject web tool
PHP
fisher’s weighted method
consensus approach
gene regulatory network
 
Description Not Available
Gene regulatory network (GRN) construction involves various steps of complex computational steps. This step-by-step procedure requires prior knowledge of programming languages such as R. Development of a web tool may reduce this complexity in the analysis steps which can be easy accessible for the user. In this study, a web tool for constructing consensus GRN by combining the outcomes obtained from four methods, namely, correlation, principal component regression, partial least square, and ridge regression, has been developed. We have designed the web tool with an interactive and user-friendly web page using the php programming language. We have used R script for the analysis steps which run in the background of the user interface. Users can upload gene expression data for constructing consensus GRN. The output obtained from analysis will be available in downloadable form in the result window of the web tool.
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Date 2022-04-19T06:09:34Z
2022-04-19T06:09:34Z
2021-11-24
 
Type Research Paper
 
Identifier Chiranjib Sarkar, Parsad Rajender, Dwijesh C. Mishra, Anil Rai (2021). A Web Tool for Consensus Gene Regulatory Network Construction, Frontiers in Genetics, 12, https://doi.org/10.3389/fgene.2021.745827
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http://krishi.icar.gov.in/jspui/handle/123456789/71618
 
Language English
 
Relation Not Available;
 
Publisher Not Available